Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12370

Experiment: R2A with Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nalidixic 0.008 mg/ml
3,082,919	+				+0.2
3,082,945	-				-0.9
3,082,985	+		CA265_RS12365	0.13	+1.0
3,082,997	-		CA265_RS12365	0.14	-0.2
3,083,032	+		CA265_RS12365	0.18	+0.4
3,083,032	+		CA265_RS12365	0.18	+0.4
3,083,102	-		CA265_RS12365	0.27	+0.2
3,083,105	+		CA265_RS12365	0.27	-0.3
3,083,106	-		CA265_RS12365	0.27	-0.5
3,083,107	+		CA265_RS12365	0.27	-0.1
3,083,107	+		CA265_RS12365	0.27	+0.1
3,083,107	+		CA265_RS12365	0.27	+0.6
3,083,108	-		CA265_RS12365	0.27	-0.0
3,083,108	-		CA265_RS12365	0.27	-1.8
3,083,151	+		CA265_RS12365	0.32	+0.3
3,083,151	+		CA265_RS12365	0.32	-0.4
3,083,173	+		CA265_RS12365	0.35	+0.4
3,083,174	-		CA265_RS12365	0.35	-0.5
3,083,182	+		CA265_RS12365	0.36	+0.2
3,083,182	+		CA265_RS12365	0.36	+0.3
3,083,182	+		CA265_RS12365	0.36	-0.2
3,083,185	+		CA265_RS12365	0.36	+0.0
3,083,189	-		CA265_RS12365	0.37	-0.0
3,083,236	-		CA265_RS12365	0.42	-0.9
3,083,246	-		CA265_RS12365	0.43	+0.2
3,083,292	+		CA265_RS12365	0.49	+1.0
3,083,353	+		CA265_RS12365	0.56	-0.6
3,083,354	-		CA265_RS12365	0.56	+0.5
3,083,418	+		CA265_RS12365	0.63	-0.8
3,083,446	+		CA265_RS12365	0.67	+0.2
3,083,447	-		CA265_RS12365	0.67	+0.3
3,083,492	+		CA265_RS12365	0.72	-0.1
3,083,493	-		CA265_RS12365	0.72	-0.4
3,083,509	+		CA265_RS12365	0.74	+0.9
3,083,562	-		CA265_RS12365	0.80	+0.4
3,083,588	-		CA265_RS12365	0.83	+0.5
3,083,588	-		CA265_RS12365	0.83	+0.2
3,083,595	+		CA265_RS12365	0.84	+0.2
3,083,750	+				+0.8
3,083,791	+				+0.1
3,083,837	+				+0.4
3,083,838	-				+0.1
3,083,872	+				+0.6
3,083,873	-				-0.2
3,083,873	-				+0.4
3,083,888	-				+0.6
3,083,913	+				-0.9
3,083,919	-				-0.4
3,083,974	+				+0.1
3,083,975	-				-1.5
3,083,995	+				-0.8
3,084,037	+		CA265_RS12370	0.14	-0.8
3,084,037	+		CA265_RS12370	0.14	-0.4
3,084,038	-		CA265_RS12370	0.14	-0.1
3,084,039	+		CA265_RS12370	0.14	-2.2
3,084,113	-		CA265_RS12370	0.22	-0.8
3,084,127	-		CA265_RS12370	0.24	+0.1
3,084,138	+		CA265_RS12370	0.25	+0.5
3,084,158	+		CA265_RS12370	0.28	+0.3
3,084,158	+		CA265_RS12370	0.28	+1.0
3,084,159	-		CA265_RS12370	0.28	+0.2
3,084,159	-		CA265_RS12370	0.28	+0.0
3,084,173	-		CA265_RS12370	0.29	+0.0
3,084,322	-		CA265_RS12370	0.46	+0.5
3,084,322	-		CA265_RS12370	0.46	-0.8
3,084,323	+		CA265_RS12370	0.46	+0.3
3,084,323	+		CA265_RS12370	0.46	+0.4
3,084,389	-		CA265_RS12370	0.54	-0.6
3,084,436	-		CA265_RS12370	0.59	-0.4
3,084,441	-		CA265_RS12370	0.60	+0.9
3,084,474	+		CA265_RS12370	0.64	+0.2
3,084,613	+		CA265_RS12370	0.79	-0.1
3,084,619	-		CA265_RS12370	0.80	-0.3
3,084,638	+		CA265_RS12370	0.82	+0.1
3,084,639	-		CA265_RS12370	0.82	-0.1
3,084,660	+		CA265_RS12370	0.85	+0.6
3,084,725	-				-1.3
3,084,748	+				-0.4
3,084,749	-				-0.4
3,084,768	-				-1.0
3,084,826	+				-0.4
3,084,834	+				+0.5
3,084,910	+				-1.1
3,084,910	+				-1.4
3,084,952	-				-0.6
3,084,968	-				-0.4
3,084,969	+				+0.0
3,084,970	-				+0.5
3,085,032	-		CA265_RS12375	0.11	+0.7
3,085,044	+		CA265_RS12375	0.13	-0.3
3,085,065	-		CA265_RS12375	0.18	+1.3
3,085,089	+		CA265_RS12375	0.22	-1.0
3,085,097	+		CA265_RS12375	0.24	-1.4
3,085,111	+		CA265_RS12375	0.27	-0.4
3,085,111	+		CA265_RS12375	0.27	-1.2
3,085,111	+		CA265_RS12375	0.27	-1.3
3,085,145	+		CA265_RS12375	0.33	-0.2
3,085,238	+		CA265_RS12375	0.52	-1.1
3,085,338	-		CA265_RS12375	0.71	+0.3
3,085,365	+		CA265_RS12375	0.77	-2.1
3,085,366	-		CA265_RS12375	0.77	+0.0
3,085,366	-		CA265_RS12375	0.77	+2.2
3,085,376	+		CA265_RS12375	0.79	-0.0
3,085,376	+		CA265_RS12375	0.79	-3.1
3,085,430	+		CA265_RS12375	0.90	-1.3
3,085,430	+		CA265_RS12375	0.90	+0.4
3,085,430	+		CA265_RS12375	0.90	-1.4
3,085,431	-		CA265_RS12375	0.90	+0.5
3,085,431	-		CA265_RS12375	0.90	-0.1
3,085,439	+				+1.9
3,085,439	+				-0.5
3,085,499	+				-1.5
3,085,500	-				-0.3
3,085,502	+				-0.1
3,085,532	-				+0.0
3,085,611	+				-0.0
3,085,618	+				-0.4
3,085,628	-				-1.3
3,085,635	+				-0.2
3,085,680	-				+0.2
3,085,786	+				-0.0