Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10575

Experiment: R2A with Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nalidixic 0.008 mg/ml
2,614,539	+				+0.6
2,614,600	+		CA265_RS10570	0.15	-0.8
2,614,643	+		CA265_RS10570	0.20	+0.3
2,614,665	+		CA265_RS10570	0.22	+0.2
2,614,768	-		CA265_RS10570	0.33	-3.2
2,614,819	-		CA265_RS10570	0.38	-0.2
2,614,899	+		CA265_RS10570	0.46	-0.2
2,614,900	-		CA265_RS10570	0.47	-0.1
2,614,928	-		CA265_RS10570	0.50	-0.2
2,614,966	-		CA265_RS10570	0.54	+0.2
2,615,024	+		CA265_RS10570	0.60	-1.1
2,615,025	-		CA265_RS10570	0.60	-0.0
2,615,025	-		CA265_RS10570	0.60	-0.6
2,615,025	-		CA265_RS10570	0.60	-0.9
2,615,160	+		CA265_RS10570	0.74	+0.5
2,615,161	-		CA265_RS10570	0.74	+0.5
2,615,166	+		CA265_RS10570	0.74	+0.6
2,615,166	+		CA265_RS10570	0.74	+0.7
2,615,167	-		CA265_RS10570	0.75	-0.3
2,615,177	+		CA265_RS10570	0.76	-0.9
2,615,178	-		CA265_RS10570	0.76	+0.5
2,615,278	+		CA265_RS10570	0.86	+0.4
2,615,417	-				+0.4
2,615,430	-				-0.4
2,615,520	+				+0.0
2,615,520	+				-0.5
2,615,589	+				-0.4
2,615,593	-				-0.2
2,615,623	+				-0.1
2,615,624	-				-0.4
2,615,625	+				-0.1
2,615,693	-		CA265_RS10575	0.11	-0.0
2,615,693	-		CA265_RS10575	0.11	-0.8
2,615,780	+		CA265_RS10575	0.14	+0.1
2,615,886	+		CA265_RS10575	0.18	-1.7
2,615,912	-		CA265_RS10575	0.19	+0.2
2,615,946	+		CA265_RS10575	0.20	-0.4
2,615,964	+		CA265_RS10575	0.21	-0.1
2,615,985	+		CA265_RS10575	0.22	-1.2
2,616,095	+		CA265_RS10575	0.26	+0.7
2,616,095	+		CA265_RS10575	0.26	-0.1
2,616,161	+		CA265_RS10575	0.28	+0.0
2,616,190	-		CA265_RS10575	0.29	+0.8
2,616,190	-		CA265_RS10575	0.29	+0.0
2,616,234	+		CA265_RS10575	0.31	+0.4
2,616,234	+		CA265_RS10575	0.31	-1.0
2,616,280	-		CA265_RS10575	0.33	+0.4
2,616,280	-		CA265_RS10575	0.33	-0.7
2,616,380	+		CA265_RS10575	0.37	-0.4
2,616,407	+		CA265_RS10575	0.38	-1.5
2,616,425	-		CA265_RS10575	0.38	-0.2
2,616,452	-		CA265_RS10575	0.39	+0.0
2,616,457	-		CA265_RS10575	0.40	+0.4
2,616,492	+		CA265_RS10575	0.41	-0.0
2,616,496	+		CA265_RS10575	0.41	+1.2
2,616,574	+		CA265_RS10575	0.44	-0.9
2,616,575	-		CA265_RS10575	0.44	-1.0
2,616,604	+		CA265_RS10575	0.45	-0.1
2,616,604	+		CA265_RS10575	0.45	-1.2
2,616,643	-		CA265_RS10575	0.47	-0.1
2,616,735	+		CA265_RS10575	0.50	-0.4
2,616,735	+		CA265_RS10575	0.50	+0.1
2,616,736	-		CA265_RS10575	0.50	-0.4
2,616,742	+		CA265_RS10575	0.50	-0.4
2,616,748	+		CA265_RS10575	0.50	-0.5
2,616,748	+		CA265_RS10575	0.50	-0.6
2,616,829	+		CA265_RS10575	0.53	-0.3
2,616,847	+		CA265_RS10575	0.54	+0.0
2,616,848	-		CA265_RS10575	0.54	-0.7
2,616,848	-		CA265_RS10575	0.54	-0.3
2,616,857	+		CA265_RS10575	0.55	+0.0
2,616,877	-		CA265_RS10575	0.55	+0.2
2,616,881	-		CA265_RS10575	0.55	+0.0
2,616,922	+		CA265_RS10575	0.57	+0.1
2,616,924	+		CA265_RS10575	0.57	-0.6
2,616,939	+		CA265_RS10575	0.58	+0.6
2,616,939	+		CA265_RS10575	0.58	+0.7
2,617,036	-		CA265_RS10575	0.61	-0.0
2,617,064	-		CA265_RS10575	0.62	+2.0
2,617,072	-		CA265_RS10575	0.63	+1.3
2,617,115	-		CA265_RS10575	0.64	+0.2
2,617,125	+		CA265_RS10575	0.65	-0.5
2,617,125	+		CA265_RS10575	0.65	+0.0
2,617,129	+		CA265_RS10575	0.65	+0.0
2,617,130	-		CA265_RS10575	0.65	-0.6
2,617,167	+		CA265_RS10575	0.66	-0.4
2,617,168	-		CA265_RS10575	0.66	-0.9
2,617,191	+		CA265_RS10575	0.67	-0.9
2,617,192	-		CA265_RS10575	0.67	-0.7
2,617,290	-		CA265_RS10575	0.71	-0.1
2,617,407	-		CA265_RS10575	0.75	-0.3
2,617,413	+		CA265_RS10575	0.75	-0.2
2,617,578	-				-0.3
2,617,594	-		CA265_RS10575	0.82	-0.4
2,617,594	-		CA265_RS10575	0.82	-0.7
2,617,632	+		CA265_RS10575	0.84	+0.4
2,617,652	-		CA265_RS10575	0.84	-0.8
2,617,654	-		CA265_RS10575	0.85	+0.1
2,617,662	+		CA265_RS10575	0.85	+0.4
2,617,663	-		CA265_RS10575	0.85	+0.1
2,617,663	-		CA265_RS10575	0.85	-1.2
2,617,686	+		CA265_RS10575	0.86	+0.9
2,617,687	-		CA265_RS10575	0.86	+0.6
2,617,699	+		CA265_RS10575	0.86	-0.2
2,617,728	+		CA265_RS10575	0.87	+0.3
2,617,774	-		CA265_RS10575	0.89	+0.2
2,617,841	+				+0.2
2,617,841	+				-0.3
2,617,858	-				+0.4
2,617,876	+				-0.6
2,617,896	+				-0.9
2,617,896	+				-0.3
2,617,909	+				+1.0
2,617,971	-				-1.1
2,618,015	-				+0.5
2,618,015	-				-1.3
2,618,098	-				-0.2
2,618,101	-				-0.7
2,618,107	-				+0.1
2,618,107	-				+0.7
2,618,110	+				-0.4
2,618,155	+				+0.5
2,618,157	+				+0.0
2,618,157	+				+0.2
2,618,164	-				+2.2
2,618,328	+				+0.2
2,618,329	-				+0.0
2,618,332	-				-1.1
2,618,428	+				+0.1
2,618,435	+				-0.1
2,618,439	+				+0.1
2,618,440	-				+0.6
2,618,443	-				-1.0
2,618,493	+		CA265_RS10580	0.12	-0.1
2,618,529	-		CA265_RS10580	0.14	+0.6
2,618,593	+		CA265_RS10580	0.18	+0.1
2,618,604	+		CA265_RS10580	0.19	-0.2
2,618,605	-		CA265_RS10580	0.19	-0.0
2,618,629	+		CA265_RS10580	0.21	-0.4
2,618,656	+		CA265_RS10580	0.23	+0.5
2,618,692	-		CA265_RS10580	0.25	-0.6
2,618,712	+		CA265_RS10580	0.26	+0.4
2,618,832	+		CA265_RS10580	0.34	+0.3
2,618,833	-		CA265_RS10580	0.34	+0.0
2,618,837	-		CA265_RS10580	0.35	-0.1
2,618,970	+		CA265_RS10580	0.44	+0.5
2,618,986	-		CA265_RS10580	0.45	-0.3
2,618,995	+		CA265_RS10580	0.45	-0.2
2,619,011	-		CA265_RS10580	0.46	-1.9
2,619,014	+		CA265_RS10580	0.47	+0.2