Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07960

Experiment: R2A with Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nalidixic 0.008 mg/ml
1,985,019	+		CA265_RS07955	0.48	-0.1
1,985,058	+		CA265_RS07955	0.50	+0.3
1,985,058	+		CA265_RS07955	0.50	+0.6
1,985,060	+		CA265_RS07955	0.50	+0.1
1,985,077	-		CA265_RS07955	0.51	+0.3
1,985,096	-		CA265_RS07955	0.52	+0.4
1,985,157	-		CA265_RS07955	0.55	+1.2
1,985,263	+		CA265_RS07955	0.61	+0.1
1,985,264	-		CA265_RS07955	0.61	+0.5
1,985,387	-		CA265_RS07955	0.68	+0.8
1,985,406	-		CA265_RS07955	0.69	-0.5
1,985,448	+		CA265_RS07955	0.71	-0.4
1,985,448	+		CA265_RS07955	0.71	-0.5
1,985,448	+		CA265_RS07955	0.71	-1.0
1,985,465	+		CA265_RS07955	0.72	-0.2
1,985,465	+		CA265_RS07955	0.72	+1.3
1,985,492	-		CA265_RS07955	0.74	-0.1
1,985,546	+		CA265_RS07955	0.76	-0.9
1,985,547	-		CA265_RS07955	0.77	+0.1
1,985,547	-		CA265_RS07955	0.77	+0.3
1,985,547	-		CA265_RS07955	0.77	+1.1
1,985,652	+		CA265_RS07955	0.82	-0.8
1,985,655	-		CA265_RS07955	0.82	+0.2
1,985,689	+		CA265_RS07955	0.84	-0.3
1,985,715	-		CA265_RS07955	0.86	+0.0
1,985,715	-		CA265_RS07955	0.86	+0.1
1,985,858	+				-0.7
1,985,870	+				+0.2
1,985,871	-				+0.3
1,985,871	-				+0.3
1,985,957	+				-0.4
1,985,958	-				+0.3
1,985,968	+				-0.0
1,986,127	+		CA265_RS07960	0.16	-0.6
1,986,155	+		CA265_RS07960	0.19	-0.3
1,986,216	+		CA265_RS07960	0.26	-0.8
1,986,217	-		CA265_RS07960	0.26	+0.1
1,986,288	-		CA265_RS07960	0.34	-0.3
1,986,323	+		CA265_RS07960	0.38	-0.3
1,986,324	-		CA265_RS07960	0.38	+0.3
1,986,414	-		CA265_RS07960	0.48	-0.2
1,986,455	-		CA265_RS07960	0.53	-2.0
1,986,481	-		CA265_RS07960	0.56	+0.4
1,986,488	+		CA265_RS07960	0.57	+0.1
1,986,518	-		CA265_RS07960	0.60	+0.8
1,986,544	+		CA265_RS07960	0.63	-0.1
1,986,544	+		CA265_RS07960	0.63	-0.2
1,986,545	-		CA265_RS07960	0.63	-1.0
1,986,546	+				+0.9
1,986,557	-		CA265_RS07960	0.64	-0.1
1,986,661	+		CA265_RS07960	0.76	-0.3
1,986,726	+		CA265_RS07960	0.83	+0.0
1,986,737	+		CA265_RS07960	0.85	-0.1
1,986,754	+		CA265_RS07960	0.87	+0.1
1,986,795	+				+0.5
1,986,800	+				-0.1
1,986,803	+				-2.5
1,986,804	-				-0.6
1,986,804	-				+1.4
1,986,872	-				-0.0
1,986,991	-				+0.0
1,987,052	+		CA265_RS07965	0.15	-0.5
1,987,086	+		CA265_RS07965	0.18	+0.6
1,987,115	-		CA265_RS07965	0.21	-0.1
1,987,120	+		CA265_RS07965	0.22	-0.3
1,987,181	-		CA265_RS07965	0.27	-0.1
1,987,182	+		CA265_RS07965	0.27	-0.8
1,987,183	-		CA265_RS07965	0.27	+0.2
1,987,198	+		CA265_RS07965	0.29	+0.7
1,987,220	-		CA265_RS07965	0.31	-0.1
1,987,373	-		CA265_RS07965	0.45	-1.1
1,987,375	-		CA265_RS07965	0.45	+0.8
1,987,406	-		CA265_RS07965	0.48	+0.3
1,987,438	+		CA265_RS07965	0.51	-0.1
1,987,438	+		CA265_RS07965	0.51	+1.2
1,987,522	+		CA265_RS07965	0.59	+0.2
1,987,620	+		CA265_RS07965	0.68	+0.1
1,987,651	-		CA265_RS07965	0.71	+0.1
1,987,654	+		CA265_RS07965	0.71	+0.4
1,987,725	+		CA265_RS07965	0.77	+0.3
1,987,726	-		CA265_RS07965	0.77	+0.7
1,987,726	-		CA265_RS07965	0.77	-0.0
1,987,726	-		CA265_RS07965	0.77	+0.2
1,987,758	+		CA265_RS07965	0.80	-0.5
1,987,761	+		CA265_RS07965	0.81	-0.1
1,987,762	-		CA265_RS07965	0.81	+0.2
1,987,784	-		CA265_RS07965	0.83	+0.0
1,987,827	+		CA265_RS07965	0.87	-0.2
1,987,827	+		CA265_RS07965	0.87	+0.3
1,987,828	-		CA265_RS07965	0.87	+0.0
1,987,828	-		CA265_RS07965	0.87	-0.1