Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05470

Experiment: R2A with Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nalidixic 0.008 mg/ml
1,319,603	+		CA265_RS05465	0.27	-0.4
1,319,621	-		CA265_RS05465	0.29	+0.1
1,319,639	+		CA265_RS05465	0.30	-1.0
1,319,681	-		CA265_RS05465	0.34	-0.8
1,319,681	-		CA265_RS05465	0.34	-0.3
1,319,682	+		CA265_RS05465	0.34	-1.7
1,319,683	-		CA265_RS05465	0.34	-0.6
1,319,742	+		CA265_RS05465	0.39	-0.7
1,319,743	-		CA265_RS05465	0.39	+0.3
1,319,748	+		CA265_RS05465	0.40	+0.2
1,319,905	-		CA265_RS05465	0.53	+0.2
1,319,905	-		CA265_RS05465	0.53	+0.1
1,319,908	+		CA265_RS05465	0.54	-0.5
1,319,942	+		CA265_RS05465	0.57	+0.6
1,319,952	+		CA265_RS05465	0.58	+1.0
1,320,029	-		CA265_RS05465	0.64	-0.3
1,320,125	-		CA265_RS05465	0.73	+0.0
1,320,160	-		CA265_RS05465	0.76	-0.3
1,320,163	+		CA265_RS05465	0.76	+0.2
1,320,173	-		CA265_RS05465	0.77	-0.5
1,320,192	-		CA265_RS05465	0.78	-0.4
1,320,192	-		CA265_RS05465	0.78	+0.3
1,320,211	+		CA265_RS05465	0.80	+0.3
1,320,346	+				-0.2
1,320,347	-				-0.1
1,320,436	+				+0.1
1,320,530	-				-0.4
1,320,578	+				-0.1
1,320,619	+				-0.5
1,320,619	+				+0.0
1,320,728	-				+0.1
1,320,742	+				-0.1
1,320,877	+				-0.6
1,320,884	+				-0.2
1,320,888	-				-1.0
1,320,888	-				+0.1
1,320,935	+		CA265_RS05470	0.11	-0.9
1,321,019	+		CA265_RS05470	0.13	-0.1
1,321,019	+		CA265_RS05470	0.13	-1.0
1,321,020	-		CA265_RS05470	0.13	+0.1
1,321,020	-		CA265_RS05470	0.13	-0.4
1,321,020	-		CA265_RS05470	0.13	-1.2
1,321,033	+		CA265_RS05470	0.14	-1.2
1,321,033	+		CA265_RS05470	0.14	-0.1
1,321,040	-		CA265_RS05470	0.14	-0.3
1,321,229	+		CA265_RS05470	0.20	-0.6
1,321,230	-		CA265_RS05470	0.20	+0.4
1,321,258	+		CA265_RS05470	0.21	-1.7
1,321,370	-		CA265_RS05470	0.25	-1.0
1,321,379	+		CA265_RS05470	0.25	-0.4
1,321,379	+		CA265_RS05470	0.25	+0.6
1,321,380	-		CA265_RS05470	0.25	-0.4
1,321,479	+		CA265_RS05470	0.28	-0.5
1,321,479	+		CA265_RS05470	0.28	-0.4
1,321,480	-		CA265_RS05470	0.28	+0.6
1,321,480	-		CA265_RS05470	0.28	-0.7
1,321,491	+		CA265_RS05470	0.29	-1.2
1,321,519	+		CA265_RS05470	0.30	-0.9
1,321,520	-		CA265_RS05470	0.30	+0.6
1,321,525	+		CA265_RS05470	0.30	+0.9
1,321,525	+		CA265_RS05470	0.30	-0.8
1,321,593	+		CA265_RS05470	0.32	-1.0
1,321,718	-		CA265_RS05470	0.36	-0.2
1,321,718	-		CA265_RS05470	0.36	-1.3
1,321,718	-		CA265_RS05470	0.36	-0.9
1,321,750	+		CA265_RS05470	0.37	+0.2
1,321,789	+		CA265_RS05470	0.38	+0.2
1,321,793	+		CA265_RS05470	0.38	-0.2
1,321,834	-		CA265_RS05470	0.40	+1.1
1,321,847	+		CA265_RS05470	0.40	-0.4
1,321,847	+		CA265_RS05470	0.40	-0.4
1,321,847	+		CA265_RS05470	0.40	-0.2
1,321,848	-		CA265_RS05470	0.40	-0.5
1,321,850	-		CA265_RS05470	0.40	-0.1
1,321,928	+		CA265_RS05470	0.43	+0.2
1,321,953	-		CA265_RS05470	0.43	-0.1
1,321,981	+		CA265_RS05470	0.44	-0.8
1,321,982	-		CA265_RS05470	0.44	-3.4
1,321,985	+		CA265_RS05470	0.44	-0.4
1,321,985	+		CA265_RS05470	0.44	+0.1
1,321,986	-		CA265_RS05470	0.45	+0.4
1,321,986	-		CA265_RS05470	0.45	+0.2
1,321,990	+		CA265_RS05470	0.45	+0.1
1,322,049	+		CA265_RS05470	0.47	-1.0
1,322,049	+		CA265_RS05470	0.47	+0.3
1,322,050	-		CA265_RS05470	0.47	-0.2
1,322,052	-		CA265_RS05470	0.47	+0.1
1,322,052	-		CA265_RS05470	0.47	-0.4
1,322,052	-		CA265_RS05470	0.47	-0.2
1,322,122	-		CA265_RS05470	0.49	-0.5
1,322,122	-		CA265_RS05470	0.49	-0.0
1,322,171	-		CA265_RS05470	0.50	+0.1
1,322,180	-		CA265_RS05470	0.51	+0.6
1,322,197	+		CA265_RS05470	0.51	-0.2
1,322,214	-		CA265_RS05470	0.52	-0.2
1,322,267	+		CA265_RS05470	0.54	+1.1
1,322,268	-		CA265_RS05470	0.54	-0.1
1,322,306	+		CA265_RS05470	0.55	-1.1
1,322,333	+		CA265_RS05470	0.56	+0.1
1,322,334	-		CA265_RS05470	0.56	+0.1
1,322,428	-		CA265_RS05470	0.59	-0.9
1,322,433	+		CA265_RS05470	0.59	-0.1
1,322,442	-		CA265_RS05470	0.59	+0.1
1,322,580	-		CA265_RS05470	0.64	+0.6
1,322,754	+		CA265_RS05470	0.69	-0.8
1,322,755	-		CA265_RS05470	0.69	-0.6
1,322,755	-		CA265_RS05470	0.69	-0.1
1,322,756	+		CA265_RS05470	0.69	-0.3
1,322,801	-		CA265_RS05470	0.71	-0.5
1,322,815	-		CA265_RS05470	0.71	+1.1
1,322,815	-		CA265_RS05470	0.71	-0.7
1,322,818	-		CA265_RS05470	0.71	-0.6
1,322,900	-		CA265_RS05470	0.74	-0.0
1,322,938	+		CA265_RS05470	0.75	-1.7
1,322,938	+		CA265_RS05470	0.75	-0.1
1,323,112	-		CA265_RS05470	0.81	-0.2
1,323,127	+		CA265_RS05470	0.81	-0.8
1,323,127	+		CA265_RS05470	0.81	-0.8
1,323,213	-		CA265_RS05470	0.84	+0.6
1,323,242	-		CA265_RS05470	0.85	+0.4
1,323,374	-		CA265_RS05470	0.89	+0.4
1,323,405	-				-0.1
1,323,412	+				-0.1
1,323,498	-				-1.2
1,323,506	+				-0.6
1,323,524	-				+0.8
1,323,550	+				-0.6
1,323,559	-				+0.2
1,323,595	-				+1.1
1,323,596	+				-0.1
1,323,616	+				-1.2
1,323,617	-				-0.4
1,323,667	-				-1.1
1,323,738	-				-0.8
1,323,753	+				-0.1
1,323,757	+				+1.0
1,323,757	+				-0.2
1,323,883	+				-0.6
1,323,885	+				-0.5
1,323,905	+		CA265_RS05475	0.11	-2.2
1,323,928	-		CA265_RS05475	0.12	-0.7
1,323,928	-		CA265_RS05475	0.12	-0.1
1,323,928	-		CA265_RS05475	0.12	-1.0
1,323,929	+		CA265_RS05475	0.12	-0.2
1,324,006	+		CA265_RS05475	0.17	-0.2
1,324,074	+		CA265_RS05475	0.22	+0.3
1,324,094	+		CA265_RS05475	0.23	-0.2
1,324,095	-		CA265_RS05475	0.23	-0.3
1,324,095	-		CA265_RS05475	0.23	+0.4
1,324,189	-		CA265_RS05475	0.29	-0.2
1,324,308	-		CA265_RS05475	0.37	-1.1
1,324,410	+		CA265_RS05475	0.44	-0.1
1,324,411	-		CA265_RS05475	0.44	-0.5
1,324,447	-		CA265_RS05475	0.46	-0.9
1,324,474	-		CA265_RS05475	0.48	-1.0
1,324,480	-		CA265_RS05475	0.49	-0.3
1,324,497	+		CA265_RS05475	0.50	+0.3
1,324,498	-		CA265_RS05475	0.50	+0.5
1,324,524	-		CA265_RS05475	0.51	-0.4
1,324,569	-		CA265_RS05475	0.54	+0.0
1,324,659	+		CA265_RS05475	0.60	+0.1