Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05280

Experiment: R2A with Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nalidixic 0.008 mg/ml
1,260,752	+		CA265_RS05270	0.85	-0.8
1,260,752	+		CA265_RS05270	0.85	-0.6
1,260,752	+		CA265_RS05270	0.85	+0.7
1,260,753	-		CA265_RS05270	0.86	+0.8
1,260,785	+		CA265_RS05270	0.90	-0.8
1,260,841	-				+0.2
1,260,847	+				-0.3
1,260,911	-				-1.8
1,260,964	-		CA265_RS05275	0.17	-1.5
1,260,990	+		CA265_RS05275	0.26	+0.1
1,260,991	-		CA265_RS05275	0.27	-1.1
1,261,122	+		CA265_RS05275	0.71	-0.5
1,261,125	+		CA265_RS05275	0.72	-0.2
1,261,213	-				-0.7
1,261,222	-				+0.3
1,261,259	-				-0.6
1,261,348	+				-0.0
1,261,391	-				-0.4
1,261,399	+				+0.2
1,261,419	+				+0.3
1,261,452	-				-0.2
1,261,484	+				+0.2
1,261,485	-				-0.2
1,261,491	-				-0.0
1,261,505	+				-0.0
1,261,506	-				-0.6
1,261,621	+				+0.2
1,261,624	+				+0.3
1,261,624	+				+0.2
1,261,643	+				+0.1
1,261,650	+				+1.2
1,261,683	-				-0.3
1,261,700	+				-0.6
1,261,709	+				+0.0
1,261,771	+				-0.2
1,261,772	-				-0.1
1,261,772	-				-0.3
1,261,815	+				-0.2
1,261,886	+				-0.1
1,261,886	+				-0.1
1,261,887	-				-2.0
1,261,973	-		CA265_RS05280	0.12	+1.2
1,262,026	+		CA265_RS05280	0.15	-0.6
1,262,026	+		CA265_RS05280	0.15	+0.4
1,262,027	-		CA265_RS05280	0.15	-0.0
1,262,027	-		CA265_RS05280	0.15	-0.7
1,262,080	-		CA265_RS05280	0.17	-0.6
1,262,086	+		CA265_RS05280	0.17	+0.7
1,262,087	-		CA265_RS05280	0.17	+0.0
1,262,087	-		CA265_RS05280	0.17	-0.5
1,262,109	+		CA265_RS05280	0.18	+0.3
1,262,109	+		CA265_RS05280	0.18	-0.3
1,262,152	+		CA265_RS05280	0.19	-0.9
1,262,167	+		CA265_RS05280	0.20	+0.1
1,262,167	+		CA265_RS05280	0.20	+0.4
1,262,167	+		CA265_RS05280	0.20	-0.8
1,262,168	-		CA265_RS05280	0.20	+0.3
1,262,170	-		CA265_RS05280	0.20	-0.1
1,262,263	+		CA265_RS05280	0.24	+0.2
1,262,263	+		CA265_RS05280	0.24	+0.0
1,262,264	-		CA265_RS05280	0.24	+0.4
1,262,307	+		CA265_RS05280	0.25	+0.5
1,262,320	+		CA265_RS05280	0.26	+0.5
1,262,320	+		CA265_RS05280	0.26	-0.9
1,262,338	+		CA265_RS05280	0.27	-0.0
1,262,338	+		CA265_RS05280	0.27	-1.2
1,262,430	+		CA265_RS05280	0.30	+0.7
1,262,451	-		CA265_RS05280	0.31	-0.1
1,262,477	-		CA265_RS05280	0.32	-0.1
1,262,561	-		CA265_RS05280	0.35	+0.5
1,262,561	-		CA265_RS05280	0.35	+0.5
1,262,561	-		CA265_RS05280	0.35	+0.5
1,262,577	+		CA265_RS05280	0.36	-0.4
1,262,578	-		CA265_RS05280	0.36	+1.2
1,262,578	-		CA265_RS05280	0.36	+0.5
1,262,712	+		CA265_RS05280	0.41	-0.8
1,262,752	+		CA265_RS05280	0.43	-0.5
1,262,753	-		CA265_RS05280	0.43	+0.4
1,262,770	+		CA265_RS05280	0.43	+0.5
1,262,771	-		CA265_RS05280	0.43	+1.3
1,262,780	+		CA265_RS05280	0.44	+0.2
1,262,864	-		CA265_RS05280	0.47	-0.2
1,262,876	+		CA265_RS05280	0.47	-0.7
1,262,877	-		CA265_RS05280	0.48	-0.0
1,262,881	-		CA265_RS05280	0.48	+0.5
1,262,928	+		CA265_RS05280	0.49	-0.3
1,262,995	+		CA265_RS05280	0.52	-0.4
1,262,995	+		CA265_RS05280	0.52	-0.2
1,262,997	+		CA265_RS05280	0.52	-0.6
1,262,997	+		CA265_RS05280	0.52	+1.5
1,263,000	+		CA265_RS05280	0.52	-0.1
1,263,001	-		CA265_RS05280	0.52	-0.1
1,263,133	-		CA265_RS05280	0.57	+0.4
1,263,158	-		CA265_RS05280	0.58	+0.3
1,263,295	-		CA265_RS05280	0.64	+0.2
1,263,322	-		CA265_RS05280	0.65	+0.6
1,263,349	-		CA265_RS05280	0.66	+0.2
1,263,349	-		CA265_RS05280	0.66	+0.6
1,263,357	+		CA265_RS05280	0.66	+0.4
1,263,358	-		CA265_RS05280	0.66	+0.0
1,263,452	+		CA265_RS05280	0.70	+0.2
1,263,454	+		CA265_RS05280	0.70	+0.5
1,263,455	-		CA265_RS05280	0.70	-0.4
1,263,476	-		CA265_RS05280	0.71	-0.4
1,263,485	+		CA265_RS05280	0.71	+0.0
1,263,529	-		CA265_RS05280	0.73	-0.3
1,263,621	-		CA265_RS05280	0.76	+0.5
1,263,729	-		CA265_RS05280	0.81	-0.1
1,264,014	+				+0.2
1,264,014	+				+0.1
1,264,054	-				+0.7
1,264,079	+				-0.2
1,264,102	-				+0.1
1,264,117	+				-0.2
1,264,169	-				-0.2
1,264,247	-				-0.3
1,264,284	+				-0.6
1,264,297	+				+0.2
1,264,298	-				-0.0
1,264,329	+				-0.1
1,264,330	-				+0.4
1,264,351	+				+0.0
1,264,372	-				-0.8
1,264,374	+				-0.4
1,264,374	+				+0.5
1,264,375	-				-0.1
1,264,382	+				-0.4
1,264,399	+				+0.7
1,264,399	+				+0.4
1,264,402	+				+0.2
1,264,501	+				-1.0
1,264,501	+				+0.6
1,264,502	-				+1.3
1,264,502	-				+0.6
1,264,515	+				-0.2
1,264,516	-				+2.0
1,264,519	+				+0.3
1,264,584	-				+0.5
1,264,584	-				-0.1
1,264,607	+				-0.2
1,264,665	-				+0.3
1,264,710	-				-0.3
1,264,710	-				+0.7
1,264,766	-				+0.6
1,264,776	-				+0.0
1,264,802	-				-0.2
1,264,845	+				-0.4
1,264,855	+				+0.0
1,264,855	+				-0.1
1,264,856	-				+0.3
1,264,856	-				+0.0
1,264,874	-				+0.8
1,264,986	+				+0.6
1,264,987	-				-1.5
1,264,991	-				-0.2
1,265,006	-				+0.3
1,265,062	+				-0.1
1,265,063	-				+0.4
1,265,102	-		CA265_RS05285	0.10	+0.2
1,265,107	-		CA265_RS05285	0.10	+0.3
1,265,131	-		CA265_RS05285	0.11	+0.7
1,265,168	-		CA265_RS05285	0.12	+0.6
1,265,216	-		CA265_RS05285	0.14	-0.5