Experiment: R2A with Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00365 and CA265_RS00370 are separated by 1 nucleotides CA265_RS00370 and CA265_RS00375 are separated by 5 nucleotides CA265_RS00375 and CA265_RS00380 are separated by 11 nucleotides CA265_RS00380 and CA265_RS00385 are separated by 194 nucleotides
CA265_RS00365: CA265_RS00365 - two-component sensor histidine kinase, at 83,277 to 84,632
_RS00365
CA265_RS00370: CA265_RS00370 - DNA-binding response regulator, at 84,634 to 85,308
_RS00370
CA265_RS00375: CA265_RS00375 - hypothetical protein, at 85,314 to 86,165
_RS00375
CA265_RS00380: CA265_RS00380 - hypothetical protein, at 86,177 to 86,464
_RS00380
CA265_RS00385: CA265_RS00385 - hypothetical protein, at 86,659 to 87,456
_RS00385
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1 at 84.323 kb on + strand, within CA265_RS00365 at 84.333 kb on + strand, within CA265_RS00365 at 84.334 kb on - strand, within CA265_RS00365 at 84.360 kb on - strand, within CA265_RS00365 at 84.360 kb on - strand, within CA265_RS00365 at 84.421 kb on + strand, within CA265_RS00365 at 84.422 kb on - strand, within CA265_RS00365 at 84.428 kb on + strand, within CA265_RS00365 at 84.459 kb on + strand, within CA265_RS00365 at 84.561 kb on + strand at 84.561 kb on + strand at 84.562 kb on - strand at 84.577 kb on - strand at 84.607 kb on - strand at 84.690 kb on + strand at 84.693 kb on - strand at 84.777 kb on + strand, within CA265_RS00370 at 84.777 kb on + strand, within CA265_RS00370 at 84.777 kb on + strand, within CA265_RS00370 at 84.778 kb on - strand, within CA265_RS00370 at 84.886 kb on + strand, within CA265_RS00370 at 85.016 kb on + strand, within CA265_RS00370 at 85.016 kb on + strand, within CA265_RS00370 at 85.063 kb on - strand, within CA265_RS00370 at 85.085 kb on + strand, within CA265_RS00370 at 85.085 kb on + strand, within CA265_RS00370 at 85.169 kb on + strand, within CA265_RS00370 at 85.169 kb on + strand, within CA265_RS00370 at 85.170 kb on - strand, within CA265_RS00370 at 85.170 kb on - strand, within CA265_RS00370 at 85.175 kb on + strand, within CA265_RS00370 at 85.175 kb on + strand, within CA265_RS00370 at 85.194 kb on + strand, within CA265_RS00370 at 85.194 kb on + strand, within CA265_RS00370 at 85.195 kb on - strand, within CA265_RS00370 at 85.209 kb on + strand, within CA265_RS00370 at 85.215 kb on + strand, within CA265_RS00370 at 85.216 kb on - strand, within CA265_RS00370 at 85.216 kb on - strand, within CA265_RS00370 at 85.389 kb on + strand at 85.389 kb on + strand at 85.391 kb on + strand at 85.403 kb on - strand, within CA265_RS00375 at 85.441 kb on - strand, within CA265_RS00375 at 85.467 kb on + strand, within CA265_RS00375 at 85.534 kb on - strand, within CA265_RS00375 at 85.536 kb on - strand, within CA265_RS00375 at 85.592 kb on + strand, within CA265_RS00375 at 85.594 kb on + strand, within CA265_RS00375 at 85.747 kb on - strand, within CA265_RS00375 at 85.764 kb on - strand, within CA265_RS00375 at 85.803 kb on - strand, within CA265_RS00375 at 85.858 kb on + strand, within CA265_RS00375 at 85.858 kb on + strand, within CA265_RS00375 at 85.858 kb on + strand, within CA265_RS00375 at 85.859 kb on - strand, within CA265_RS00375 at 85.900 kb on + strand, within CA265_RS00375 at 85.900 kb on + strand, within CA265_RS00375 at 85.911 kb on + strand, within CA265_RS00375 at 85.912 kb on - strand, within CA265_RS00375 at 86.010 kb on + strand, within CA265_RS00375 at 86.010 kb on + strand, within CA265_RS00375 at 86.014 kb on + strand, within CA265_RS00375 at 86.014 kb on + strand, within CA265_RS00375 at 86.015 kb on - strand, within CA265_RS00375 at 86.057 kb on + strand, within CA265_RS00375 at 86.061 kb on - strand, within CA265_RS00375 at 86.063 kb on + strand, within CA265_RS00375 at 86.064 kb on - strand, within CA265_RS00375 at 86.065 kb on + strand, within CA265_RS00375 at 86.066 kb on - strand, within CA265_RS00375 at 86.082 kb on - strand at 86.082 kb on - strand at 86.116 kb on - strand at 86.157 kb on + strand at 86.157 kb on + strand at 86.167 kb on + strand at 86.167 kb on + strand at 86.167 kb on + strand at 86.225 kb on + strand, within CA265_RS00380 at 86.226 kb on - strand, within CA265_RS00380 at 86.226 kb on - strand, within CA265_RS00380 at 86.230 kb on + strand, within CA265_RS00380 at 86.231 kb on - strand, within CA265_RS00380 at 86.390 kb on - strand, within CA265_RS00380 at 86.390 kb on - strand, within CA265_RS00380 at 86.523 kb on + strand at 86.523 kb on + strand at 86.524 kb on - strand at 86.524 kb on - strand at 86.524 kb on - strand at 86.654 kb on + strand at 86.654 kb on + strand at 86.659 kb on - strand at 86.854 kb on + strand, within CA265_RS00385 at 86.858 kb on + strand, within CA265_RS00385 at 86.858 kb on + strand, within CA265_RS00385 at 86.880 kb on - strand, within CA265_RS00385 at 86.914 kb on - strand, within CA265_RS00385 at 86.923 kb on - strand, within CA265_RS00385 at 86.979 kb on - strand, within CA265_RS00385 at 86.979 kb on - strand, within CA265_RS00385 at 86.997 kb on + strand, within CA265_RS00385
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nalidixic 0.008 mg/ml remove 84,323 + CA265_RS00365 0.77 +0.7 84,333 + CA265_RS00365 0.78 +0.7 84,334 - CA265_RS00365 0.78 +0.6 84,360 - CA265_RS00365 0.80 +0.3 84,360 - CA265_RS00365 0.80 +0.7 84,421 + CA265_RS00365 0.84 -0.1 84,422 - CA265_RS00365 0.84 -2.0 84,428 + CA265_RS00365 0.85 +0.5 84,459 + CA265_RS00365 0.87 -0.3 84,561 + -0.5 84,561 + +0.4 84,562 - -0.3 84,577 - +0.2 84,607 - +0.8 84,690 + +0.1 84,693 - -1.0 84,777 + CA265_RS00370 0.21 -0.4 84,777 + CA265_RS00370 0.21 +0.0 84,777 + CA265_RS00370 0.21 -0.4 84,778 - CA265_RS00370 0.21 -0.3 84,886 + CA265_RS00370 0.37 -0.4 85,016 + CA265_RS00370 0.57 +0.5 85,016 + CA265_RS00370 0.57 -0.0 85,063 - CA265_RS00370 0.64 -0.3 85,085 + CA265_RS00370 0.67 +1.7 85,085 + CA265_RS00370 0.67 +1.2 85,169 + CA265_RS00370 0.79 +0.8 85,169 + CA265_RS00370 0.79 -0.0 85,170 - CA265_RS00370 0.79 -0.7 85,170 - CA265_RS00370 0.79 -1.3 85,175 + CA265_RS00370 0.80 +0.5 85,175 + CA265_RS00370 0.80 +0.7 85,194 + CA265_RS00370 0.83 +0.4 85,194 + CA265_RS00370 0.83 -0.2 85,195 - CA265_RS00370 0.83 -0.1 85,209 + CA265_RS00370 0.85 +0.4 85,215 + CA265_RS00370 0.86 +0.3 85,216 - CA265_RS00370 0.86 +1.2 85,216 - CA265_RS00370 0.86 -0.2 85,389 + +1.1 85,389 + +0.0 85,391 + -0.5 85,403 - CA265_RS00375 0.10 -0.6 85,441 - CA265_RS00375 0.15 -0.4 85,467 + CA265_RS00375 0.18 +0.1 85,534 - CA265_RS00375 0.26 -1.0 85,536 - CA265_RS00375 0.26 +0.1 85,592 + CA265_RS00375 0.33 -0.8 85,594 + CA265_RS00375 0.33 +0.4 85,747 - CA265_RS00375 0.51 -0.1 85,764 - CA265_RS00375 0.53 +0.6 85,803 - CA265_RS00375 0.57 -0.2 85,858 + CA265_RS00375 0.64 -1.3 85,858 + CA265_RS00375 0.64 -0.2 85,858 + CA265_RS00375 0.64 -0.1 85,859 - CA265_RS00375 0.64 -0.2 85,900 + CA265_RS00375 0.69 -2.3 85,900 + CA265_RS00375 0.69 +0.3 85,911 + CA265_RS00375 0.70 -0.3 85,912 - CA265_RS00375 0.70 -0.4 86,010 + CA265_RS00375 0.82 -0.8 86,010 + CA265_RS00375 0.82 -0.4 86,014 + CA265_RS00375 0.82 +0.4 86,014 + CA265_RS00375 0.82 -0.1 86,015 - CA265_RS00375 0.82 +0.2 86,057 + CA265_RS00375 0.87 -0.5 86,061 - CA265_RS00375 0.88 +0.5 86,063 + CA265_RS00375 0.88 -0.1 86,064 - CA265_RS00375 0.88 -0.6 86,065 + CA265_RS00375 0.88 +0.1 86,066 - CA265_RS00375 0.88 +0.4 86,082 - -0.2 86,082 - +0.4 86,116 - +0.6 86,157 + -1.0 86,157 + +1.5 86,167 + -1.3 86,167 + +0.6 86,167 + +0.2 86,225 + CA265_RS00380 0.17 +0.1 86,226 - CA265_RS00380 0.17 +0.0 86,226 - CA265_RS00380 0.17 +0.2 86,230 + CA265_RS00380 0.18 +0.0 86,231 - CA265_RS00380 0.19 -0.6 86,390 - CA265_RS00380 0.74 +1.7 86,390 - CA265_RS00380 0.74 +0.5 86,523 + +0.1 86,523 + -1.1 86,524 - -0.4 86,524 - -0.7 86,524 - -1.0 86,654 + +1.3 86,654 + -0.3 86,659 - -1.1 86,854 + CA265_RS00385 0.24 +0.4 86,858 + CA265_RS00385 0.25 -0.6 86,858 + CA265_RS00385 0.25 -0.5 86,880 - CA265_RS00385 0.28 -0.2 86,914 - CA265_RS00385 0.32 -0.9 86,923 - CA265_RS00385 0.33 -1.4 86,979 - CA265_RS00385 0.40 -0.2 86,979 - CA265_RS00385 0.40 -0.0 86,997 + CA265_RS00385 0.42 -0.7
Or see this region's nucleotide sequence