Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33835

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33835 and AZOBR_RS33840 are separated by 31 nucleotidesAZOBR_RS33840 and AZOBR_RS33845 overlap by 11 nucleotides AZOBR_RS33835: AZOBR_RS33835 - hypothetical protein, at 130,660 to 131,811 _RS33835 AZOBR_RS33840: AZOBR_RS33840 - hypothetical protein, at 131,843 to 132,091 _RS33840 AZOBR_RS33845: AZOBR_RS33845 - heptosyltransferase, at 132,081 to 133,145 _RS33845 Position (kb) 130 131 132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 129.866 kb on + strandat 129.866 kb on + strandat 129.866 kb on + strandat 129.921 kb on + strandat 129.922 kb on - strandat 129.922 kb on - strandat 129.922 kb on - strandat 129.922 kb on - strandat 130.038 kb on + strandat 130.362 kb on + strandat 130.399 kb on - strandat 130.442 kb on - strandat 130.447 kb on + strandat 130.447 kb on + strandat 130.634 kb on + strandat 130.836 kb on + strand, within AZOBR_RS33835at 130.836 kb on + strand, within AZOBR_RS33835at 130.837 kb on - strand, within AZOBR_RS33835at 130.859 kb on - strand, within AZOBR_RS33835at 131.149 kb on + strand, within AZOBR_RS33835at 131.242 kb on + strand, within AZOBR_RS33835at 131.242 kb on + strand, within AZOBR_RS33835at 131.242 kb on + strand, within AZOBR_RS33835at 131.242 kb on + strand, within AZOBR_RS33835at 131.242 kb on + strand, within AZOBR_RS33835at 131.243 kb on - strand, within AZOBR_RS33835at 131.243 kb on - strand, within AZOBR_RS33835at 131.243 kb on - strand, within AZOBR_RS33835at 131.243 kb on - strand, within AZOBR_RS33835at 131.317 kb on + strand, within AZOBR_RS33835at 131.411 kb on - strand, within AZOBR_RS33835at 132.021 kb on + strand, within AZOBR_RS33840at 132.021 kb on + strand, within AZOBR_RS33840at 132.021 kb on + strand, within AZOBR_RS33840at 132.021 kb on + strand, within AZOBR_RS33840at 132.022 kb on - strand, within AZOBR_RS33840at 132.022 kb on - strand, within AZOBR_RS33840at 132.160 kb on + strandat 132.160 kb on + strandat 132.161 kb on - strandat 132.161 kb on - strandat 132.161 kb on - strandat 132.161 kb on - strandat 132.161 kb on - strandat 132.305 kb on - strand, within AZOBR_RS33845at 132.748 kb on + strand, within AZOBR_RS33845at 132.749 kb on - strand, within AZOBR_RS33845at 132.749 kb on - strand, within AZOBR_RS33845at 132.749 kb on - strand, within AZOBR_RS33845at 132.769 kb on + strand, within AZOBR_RS33845at 132.770 kb on - strand, within AZOBR_RS33845

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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129,866 + +1.2
129,866 + -0.4
129,866 + -2.9
129,921 + -1.5
129,922 - +1.5
129,922 - -0.1
129,922 - +0.8
129,922 - +0.2
130,038 + +2.5
130,362 + +0.7
130,399 - +0.6
130,442 - -0.0
130,447 + +0.1
130,447 + -2.9
130,634 + -0.0
130,836 + AZOBR_RS33835 0.15 -1.3
130,836 + AZOBR_RS33835 0.15 +1.3
130,837 - AZOBR_RS33835 0.15 +0.3
130,859 - AZOBR_RS33835 0.17 +0.3
131,149 + AZOBR_RS33835 0.42 -0.9
131,242 + AZOBR_RS33835 0.51 -0.4
131,242 + AZOBR_RS33835 0.51 -0.6
131,242 + AZOBR_RS33835 0.51 -0.2
131,242 + AZOBR_RS33835 0.51 +1.0
131,242 + AZOBR_RS33835 0.51 +0.9
131,243 - AZOBR_RS33835 0.51 -0.5
131,243 - AZOBR_RS33835 0.51 -0.5
131,243 - AZOBR_RS33835 0.51 +1.7
131,243 - AZOBR_RS33835 0.51 -2.7
131,317 + AZOBR_RS33835 0.57 -1.0
131,411 - AZOBR_RS33835 0.65 +0.8
132,021 + AZOBR_RS33840 0.71 -0.4
132,021 + AZOBR_RS33840 0.71 -0.3
132,021 + AZOBR_RS33840 0.71 -3.8
132,021 + AZOBR_RS33840 0.71 -1.6
132,022 - AZOBR_RS33840 0.72 -3.4
132,022 - AZOBR_RS33840 0.72 -2.2
132,160 + -2.3
132,160 + +0.3
132,161 - +1.4
132,161 - -0.1
132,161 - +1.4
132,161 - -1.3
132,161 - -0.8
132,305 - AZOBR_RS33845 0.21 -0.7
132,748 + AZOBR_RS33845 0.63 -1.1
132,749 - AZOBR_RS33845 0.63 -0.8
132,749 - AZOBR_RS33845 0.63 -0.2
132,749 - AZOBR_RS33845 0.63 -1.8
132,769 + AZOBR_RS33845 0.65 -0.5
132,770 - AZOBR_RS33845 0.65 -1.8

Or see this region's nucleotide sequence