Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33825

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33820 and AZOBR_RS33825 are separated by 190 nucleotidesAZOBR_RS33825 and AZOBR_RS33830 are separated by 514 nucleotides AZOBR_RS33820: AZOBR_RS33820 - hypothetical protein, at 125,498 to 126,271 _RS33820 AZOBR_RS33825: AZOBR_RS33825 - hypothetical protein, at 126,462 to 127,604 _RS33825 AZOBR_RS33830: AZOBR_RS33830 - mannose-1-phosphate guanylyltransferase, at 128,119 to 129,564 _RS33830 Position (kb) 126 127 128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 125.579 kb on + strand, within AZOBR_RS33820at 125.579 kb on + strand, within AZOBR_RS33820at 125.579 kb on + strand, within AZOBR_RS33820at 125.579 kb on + strand, within AZOBR_RS33820at 125.579 kb on + strand, within AZOBR_RS33820at 125.580 kb on - strand, within AZOBR_RS33820at 125.580 kb on - strand, within AZOBR_RS33820at 125.633 kb on + strand, within AZOBR_RS33820at 125.634 kb on - strand, within AZOBR_RS33820at 125.846 kb on + strand, within AZOBR_RS33820at 125.846 kb on + strand, within AZOBR_RS33820at 125.846 kb on + strand, within AZOBR_RS33820at 125.846 kb on + strandat 125.846 kb on + strand, within AZOBR_RS33820at 125.847 kb on - strand, within AZOBR_RS33820at 125.847 kb on - strand, within AZOBR_RS33820at 125.994 kb on - strand, within AZOBR_RS33820at 125.994 kb on - strand, within AZOBR_RS33820at 125.994 kb on - strand, within AZOBR_RS33820at 126.239 kb on + strandat 126.239 kb on + strandat 126.350 kb on + strandat 127.119 kb on - strand, within AZOBR_RS33825at 127.119 kb on - strand, within AZOBR_RS33825at 127.129 kb on - strand, within AZOBR_RS33825at 127.129 kb on - strand, within AZOBR_RS33825at 127.246 kb on + strandat 127.246 kb on + strand, within AZOBR_RS33825at 127.247 kb on - strand, within AZOBR_RS33825at 127.247 kb on - strand, within AZOBR_RS33825at 127.247 kb on - strand, within AZOBR_RS33825at 127.416 kb on + strand, within AZOBR_RS33825at 127.416 kb on + strand, within AZOBR_RS33825at 127.666 kb on - strandat 127.824 kb on + strandat 128.042 kb on + strandat 128.042 kb on + strandat 128.043 kb on - strandat 128.073 kb on - strandat 128.124 kb on + strandat 128.602 kb on + strand, within AZOBR_RS33830at 128.603 kb on - strand, within AZOBR_RS33830at 128.603 kb on - strand, within AZOBR_RS33830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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125,579 + AZOBR_RS33820 0.10 -2.0
125,579 + AZOBR_RS33820 0.10 -3.0
125,579 + AZOBR_RS33820 0.10 -1.5
125,579 + AZOBR_RS33820 0.10 -1.3
125,579 + AZOBR_RS33820 0.10 -3.2
125,580 - AZOBR_RS33820 0.11 -0.1
125,580 - AZOBR_RS33820 0.11 -1.2
125,633 + AZOBR_RS33820 0.17 -1.0
125,634 - AZOBR_RS33820 0.18 -1.2
125,846 + AZOBR_RS33820 0.45 -1.0
125,846 + AZOBR_RS33820 0.45 -0.3
125,846 + AZOBR_RS33820 0.45 -1.2
125,846 + -0.0
125,846 + AZOBR_RS33820 0.45 -2.7
125,847 - AZOBR_RS33820 0.45 -1.0
125,847 - AZOBR_RS33820 0.45 -1.1
125,994 - AZOBR_RS33820 0.64 -3.2
125,994 - AZOBR_RS33820 0.64 -2.6
125,994 - AZOBR_RS33820 0.64 -4.1
126,239 + +0.1
126,239 + -0.0
126,350 + +1.5
127,119 - AZOBR_RS33825 0.57 +1.7
127,119 - AZOBR_RS33825 0.57 -1.0
127,129 - AZOBR_RS33825 0.58 -3.2
127,129 - AZOBR_RS33825 0.58 -2.5
127,246 + -0.3
127,246 + AZOBR_RS33825 0.69 -1.8
127,247 - AZOBR_RS33825 0.69 -0.8
127,247 - AZOBR_RS33825 0.69 -2.0
127,247 - AZOBR_RS33825 0.69 -2.1
127,416 + AZOBR_RS33825 0.83 -0.4
127,416 + AZOBR_RS33825 0.83 +1.0
127,666 - -0.0
127,824 + +2.6
128,042 + -0.7
128,042 + -0.3
128,043 - +2.8
128,073 - -0.3
128,124 + +0.4
128,602 + AZOBR_RS33830 0.33 -0.3
128,603 - AZOBR_RS33830 0.33 -1.9
128,603 - AZOBR_RS33830 0.33 -2.4

Or see this region's nucleotide sequence