Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33535

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33530 and AZOBR_RS33535 overlap by 4 nucleotidesAZOBR_RS33535 and AZOBR_RS33540 are separated by 100 nucleotides AZOBR_RS33530: AZOBR_RS33530 - hypothetical protein, at 37,893 to 39,236 _RS33530 AZOBR_RS33535: AZOBR_RS33535 - glycosyl transferase family 1, at 39,233 to 40,480 _RS33535 AZOBR_RS33540: AZOBR_RS33540 - SAM-dependent methyltransferase, at 40,581 to 41,174 _RS33540 Position (kb) 39 40 41Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.326 kb on + strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.327 kb on - strand, within AZOBR_RS33530at 38.473 kb on + strand, within AZOBR_RS33530at 38.546 kb on - strand, within AZOBR_RS33530at 38.546 kb on - strand, within AZOBR_RS33530at 38.546 kb on - strand, within AZOBR_RS33530at 38.561 kb on - strand, within AZOBR_RS33530at 38.624 kb on - strand, within AZOBR_RS33530at 38.767 kb on + strand, within AZOBR_RS33530at 38.768 kb on - strand, within AZOBR_RS33530at 38.768 kb on - strand, within AZOBR_RS33530at 38.854 kb on + strand, within AZOBR_RS33530at 38.855 kb on - strand, within AZOBR_RS33530at 38.855 kb on - strand, within AZOBR_RS33530at 39.151 kb on + strandat 39.151 kb on + strandat 39.152 kb on - strandat 39.152 kb on - strandat 39.152 kb on - strandat 39.160 kb on + strandat 39.161 kb on - strandat 39.197 kb on - strandat 39.214 kb on + strandat 39.325 kb on - strandat 39.325 kb on - strandat 39.552 kb on + strand, within AZOBR_RS33535at 39.553 kb on - strand, within AZOBR_RS33535at 39.553 kb on - strand, within AZOBR_RS33535at 39.553 kb on - strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.561 kb on + strand, within AZOBR_RS33535at 39.562 kb on - strand, within AZOBR_RS33535at 39.562 kb on - strand, within AZOBR_RS33535at 39.562 kb on - strand, within AZOBR_RS33535at 39.597 kb on + strand, within AZOBR_RS33535at 39.598 kb on - strand, within AZOBR_RS33535at 39.598 kb on - strand, within AZOBR_RS33535at 39.681 kb on + strand, within AZOBR_RS33535at 39.682 kb on - strand, within AZOBR_RS33535at 39.711 kb on + strand, within AZOBR_RS33535at 39.712 kb on - strand, within AZOBR_RS33535at 39.831 kb on + strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.832 kb on - strand, within AZOBR_RS33535at 39.957 kb on + strand, within AZOBR_RS33535at 39.957 kb on + strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 39.958 kb on - strand, within AZOBR_RS33535at 40.119 kb on + strand, within AZOBR_RS33535at 40.119 kb on + strand, within AZOBR_RS33535at 40.120 kb on - strand, within AZOBR_RS33535at 40.120 kb on - strand, within AZOBR_RS33535at 40.135 kb on - strand, within AZOBR_RS33535at 40.135 kb on - strand, within AZOBR_RS33535at 40.173 kb on + strand, within AZOBR_RS33535at 40.173 kb on + strand, within AZOBR_RS33535at 40.173 kb on + strand, within AZOBR_RS33535at 40.174 kb on - strand, within AZOBR_RS33535at 40.254 kb on + strand, within AZOBR_RS33535at 40.255 kb on - strand, within AZOBR_RS33535at 40.299 kb on + strand, within AZOBR_RS33535at 40.299 kb on + strand, within AZOBR_RS33535at 40.299 kb on + strand, within AZOBR_RS33535at 40.299 kb on + strand, within AZOBR_RS33535at 40.299 kb on + strand, within AZOBR_RS33535at 40.299 kb on + strand, within AZOBR_RS33535at 40.299 kb on + strand, within AZOBR_RS33535at 40.299 kb on + strand, within AZOBR_RS33535at 40.299 kb on + strand, within AZOBR_RS33535at 40.300 kb on - strand, within AZOBR_RS33535at 40.300 kb on - strand, within AZOBR_RS33535at 40.338 kb on + strand, within AZOBR_RS33535at 40.473 kb on + strandat 40.473 kb on + strandat 40.473 kb on + strandat 40.789 kb on + strand, within AZOBR_RS33540at 40.789 kb on + strand, within AZOBR_RS33540at 40.789 kb on + strand, within AZOBR_RS33540at 40.790 kb on - strand, within AZOBR_RS33540at 40.790 kb on - strand, within AZOBR_RS33540at 40.831 kb on + strand, within AZOBR_RS33540at 40.832 kb on - strand, within AZOBR_RS33540at 41.200 kb on - strandat 41.343 kb on + strandat 41.344 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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38,326 + AZOBR_RS33530 0.32 -0.6
38,326 + AZOBR_RS33530 0.32 +0.0
38,326 + AZOBR_RS33530 0.32 +0.9
38,326 + AZOBR_RS33530 0.32 -0.8
38,326 + AZOBR_RS33530 0.32 -3.2
38,326 + AZOBR_RS33530 0.32 +1.0
38,327 - AZOBR_RS33530 0.32 +0.9
38,327 - AZOBR_RS33530 0.32 -1.6
38,327 - AZOBR_RS33530 0.32 -0.6
38,327 - AZOBR_RS33530 0.32 +0.5
38,327 - AZOBR_RS33530 0.32 +1.0
38,327 - AZOBR_RS33530 0.32 +0.2
38,327 - AZOBR_RS33530 0.32 +0.8
38,473 + AZOBR_RS33530 0.43 +0.6
38,546 - AZOBR_RS33530 0.49 +0.4
38,546 - AZOBR_RS33530 0.49 +0.1
38,546 - AZOBR_RS33530 0.49 +0.6
38,561 - AZOBR_RS33530 0.50 +0.4
38,624 - AZOBR_RS33530 0.54 +2.1
38,767 + AZOBR_RS33530 0.65 -0.1
38,768 - AZOBR_RS33530 0.65 +1.4
38,768 - AZOBR_RS33530 0.65 -0.3
38,854 + AZOBR_RS33530 0.72 -0.2
38,855 - AZOBR_RS33530 0.72 -1.3
38,855 - AZOBR_RS33530 0.72 -0.1
39,151 + -0.7
39,151 + +0.8
39,152 - +0.2
39,152 - +0.8
39,152 - +0.4
39,160 + -0.4
39,161 - -1.6
39,197 - -4.3
39,214 + +0.4
39,325 - -2.4
39,325 - -2.8
39,552 + AZOBR_RS33535 0.26 -4.4
39,553 - AZOBR_RS33535 0.26 -0.9
39,553 - AZOBR_RS33535 0.26 -1.2
39,553 - AZOBR_RS33535 0.26 -0.8
39,561 + AZOBR_RS33535 0.26 +1.5
39,561 + AZOBR_RS33535 0.26 +0.5
39,561 + AZOBR_RS33535 0.26 -1.2
39,561 + AZOBR_RS33535 0.26 -4.2
39,561 + AZOBR_RS33535 0.26 -0.7
39,562 - AZOBR_RS33535 0.26 -4.5
39,562 - AZOBR_RS33535 0.26 -2.1
39,562 - AZOBR_RS33535 0.26 -0.4
39,597 + AZOBR_RS33535 0.29 -0.0
39,598 - AZOBR_RS33535 0.29 +0.4
39,598 - AZOBR_RS33535 0.29 -1.2
39,681 + AZOBR_RS33535 0.36 -1.7
39,682 - AZOBR_RS33535 0.36 -1.6
39,711 + AZOBR_RS33535 0.38 -2.0
39,712 - AZOBR_RS33535 0.38 +0.9
39,831 + AZOBR_RS33535 0.48 +0.1
39,832 - AZOBR_RS33535 0.48 -2.9
39,832 - AZOBR_RS33535 0.48 -0.5
39,832 - AZOBR_RS33535 0.48 +1.5
39,832 - AZOBR_RS33535 0.48 -2.8
39,832 - AZOBR_RS33535 0.48 -2.5
39,832 - AZOBR_RS33535 0.48 -2.6
39,957 + AZOBR_RS33535 0.58 -1.3
39,957 + AZOBR_RS33535 0.58 -1.2
39,958 - AZOBR_RS33535 0.58 -2.7
39,958 - AZOBR_RS33535 0.58 -1.4
39,958 - AZOBR_RS33535 0.58 -1.8
39,958 - AZOBR_RS33535 0.58 -0.3
39,958 - AZOBR_RS33535 0.58 -1.5
40,119 + AZOBR_RS33535 0.71 -2.4
40,119 + AZOBR_RS33535 0.71 -0.8
40,120 - AZOBR_RS33535 0.71 -1.5
40,120 - AZOBR_RS33535 0.71 -2.8
40,135 - AZOBR_RS33535 0.72 -1.1
40,135 - AZOBR_RS33535 0.72 -2.1
40,173 + AZOBR_RS33535 0.75 -2.3
40,173 + AZOBR_RS33535 0.75 -0.7
40,173 + AZOBR_RS33535 0.75 -1.6
40,174 - AZOBR_RS33535 0.75 -3.4
40,254 + AZOBR_RS33535 0.82 -0.6
40,255 - AZOBR_RS33535 0.82 -0.9
40,299 + AZOBR_RS33535 0.85 -3.8
40,299 + AZOBR_RS33535 0.85 +0.5
40,299 + AZOBR_RS33535 0.85 -0.1
40,299 + AZOBR_RS33535 0.85 -1.1
40,299 + AZOBR_RS33535 0.85 -0.7
40,299 + AZOBR_RS33535 0.85 -1.9
40,299 + AZOBR_RS33535 0.85 -1.2
40,299 + AZOBR_RS33535 0.85 +0.1
40,299 + AZOBR_RS33535 0.85 -0.7
40,300 - AZOBR_RS33535 0.85 -1.2
40,300 - AZOBR_RS33535 0.85 +0.4
40,338 + AZOBR_RS33535 0.89 -2.8
40,473 + -1.4
40,473 + +0.8
40,473 + -2.5
40,789 + AZOBR_RS33540 0.35 -0.3
40,789 + AZOBR_RS33540 0.35 -1.9
40,789 + AZOBR_RS33540 0.35 +0.7
40,790 - AZOBR_RS33540 0.35 -0.7
40,790 - AZOBR_RS33540 0.35 +0.0
40,831 + AZOBR_RS33540 0.42 -0.3
40,832 - AZOBR_RS33540 0.42 +0.4
41,200 - +0.5
41,343 + +1.3
41,344 - -2.9

Or see this region's nucleotide sequence