Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26945 and AZOBR_RS26950 are separated by 421 nucleotides AZOBR_RS26950 and AZOBR_RS26955 are separated by 30 nucleotides AZOBR_RS26955 and AZOBR_RS26960 are separated by 260 nucleotides
AZOBR_RS26945: AZOBR_RS26945 - branched-chain amino acid ABC transporter, at 191,835 to 192,545
_RS26945
AZOBR_RS26950: AZOBR_RS26950 - membrane protein, at 192,967 to 193,626
_RS26950
AZOBR_RS26955: AZOBR_RS26955 - two-component response regulator, at 193,657 to 194,043
_RS26955
AZOBR_RS26960: AZOBR_RS26960 - hypothetical protein, at 194,304 to 196,016
_RS26960
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 192.090 kb on + strand, within AZOBR_RS26945 at 192.091 kb on - strand, within AZOBR_RS26945 at 192.189 kb on + strand, within AZOBR_RS26945 at 192.190 kb on - strand, within AZOBR_RS26945 at 192.190 kb on - strand, within AZOBR_RS26945 at 192.190 kb on - strand, within AZOBR_RS26945 at 192.746 kb on + strand at 192.747 kb on - strand at 193.088 kb on + strand, within AZOBR_RS26950 at 193.194 kb on - strand, within AZOBR_RS26950 at 193.250 kb on + strand, within AZOBR_RS26950 at 193.268 kb on + strand, within AZOBR_RS26950 at 193.269 kb on - strand, within AZOBR_RS26950 at 194.106 kb on + strand at 194.107 kb on - strand at 194.186 kb on - strand at 194.186 kb on - strand at 194.421 kb on + strand at 194.568 kb on + strand, within AZOBR_RS26960 at 194.568 kb on + strand, within AZOBR_RS26960 at 194.568 kb on + strand, within AZOBR_RS26960 at 194.595 kb on - strand, within AZOBR_RS26960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 192,090 + AZOBR_RS26945 0.36 -0.6 192,091 - AZOBR_RS26945 0.36 -0.1 192,189 + AZOBR_RS26945 0.50 +0.1 192,190 - AZOBR_RS26945 0.50 -1.7 192,190 - AZOBR_RS26945 0.50 +1.8 192,190 - AZOBR_RS26945 0.50 -0.6 192,746 + -0.0 192,747 - -3.4 193,088 + AZOBR_RS26950 0.18 +1.2 193,194 - AZOBR_RS26950 0.34 +2.2 193,250 + AZOBR_RS26950 0.43 +0.2 193,268 + AZOBR_RS26950 0.46 -1.7 193,269 - AZOBR_RS26950 0.46 +0.5 194,106 + +0.2 194,107 - -0.2 194,186 - +0.4 194,186 - -0.3 194,421 + +1.2 194,568 + AZOBR_RS26960 0.15 -1.0 194,568 + AZOBR_RS26960 0.15 -1.2 194,568 + AZOBR_RS26960 0.15 +1.7 194,595 - AZOBR_RS26960 0.17 +1.0
Or see this region's nucleotide sequence