Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19100

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS19090 and AZOBR_RS19095 overlap by 4 nucleotidesAZOBR_RS19095 and AZOBR_RS19100 overlap by 11 nucleotidesAZOBR_RS19100 and AZOBR_RS19105 are separated by 18 nucleotides AZOBR_RS19090: AZOBR_RS19090 - iron ABC transporter ATP-binding protein, at 1,052,540 to 1,053,298 _RS19090 AZOBR_RS19095: AZOBR_RS19095 - enterobactin ABC transporter permease, at 1,053,295 to 1,054,278 _RS19095 AZOBR_RS19100: AZOBR_RS19100 - iron ABC transporter permease, at 1,054,268 to 1,055,239 _RS19100 AZOBR_RS19105: AZOBR_RS19105 - iron ABC transporter substrate-binding protein, at 1,055,258 to 1,056,187 _RS19105 Position (kb) 1054 1055 1056Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1053.268 kb on - strandat 1053.485 kb on + strand, within AZOBR_RS19095at 1053.486 kb on - strand, within AZOBR_RS19095at 1053.486 kb on - strand, within AZOBR_RS19095at 1053.905 kb on + strand, within AZOBR_RS19095at 1054.302 kb on + strandat 1054.302 kb on + strandat 1054.302 kb on + strandat 1054.303 kb on - strandat 1055.334 kb on + strandat 1055.334 kb on + strandat 1055.334 kb on + strandat 1055.335 kb on - strandat 1055.602 kb on - strand, within AZOBR_RS19105at 1055.895 kb on + strand, within AZOBR_RS19105at 1055.928 kb on + strand, within AZOBR_RS19105at 1055.929 kb on - strand, within AZOBR_RS19105at 1055.929 kb on - strand, within AZOBR_RS19105at 1055.943 kb on + strand, within AZOBR_RS19105at 1055.943 kb on + strand, within AZOBR_RS19105at 1055.943 kb on + strand, within AZOBR_RS19105at 1055.944 kb on - strand, within AZOBR_RS19105at 1055.944 kb on - strand, within AZOBR_RS19105at 1055.944 kb on - strand, within AZOBR_RS19105at 1055.944 kb on - strand, within AZOBR_RS19105at 1056.108 kb on + strandat 1056.108 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
1,053,268 - -0.1
1,053,485 + AZOBR_RS19095 0.19 -1.1
1,053,486 - AZOBR_RS19095 0.19 -0.1
1,053,486 - AZOBR_RS19095 0.19 +1.3
1,053,905 + AZOBR_RS19095 0.62 -0.0
1,054,302 + +0.2
1,054,302 + +0.7
1,054,302 + +0.2
1,054,303 - -0.1
1,055,334 + -0.2
1,055,334 + -4.0
1,055,334 + +1.9
1,055,335 - -1.3
1,055,602 - AZOBR_RS19105 0.37 +1.5
1,055,895 + AZOBR_RS19105 0.68 -0.1
1,055,928 + AZOBR_RS19105 0.72 -0.3
1,055,929 - AZOBR_RS19105 0.72 -2.0
1,055,929 - AZOBR_RS19105 0.72 -0.5
1,055,943 + AZOBR_RS19105 0.74 -3.3
1,055,943 + AZOBR_RS19105 0.74 +0.2
1,055,943 + AZOBR_RS19105 0.74 +0.9
1,055,944 - AZOBR_RS19105 0.74 +0.1
1,055,944 - AZOBR_RS19105 0.74 -0.7
1,055,944 - AZOBR_RS19105 0.74 -0.3
1,055,944 - AZOBR_RS19105 0.74 +1.4
1,056,108 + +1.0
1,056,108 + +0.6

Or see this region's nucleotide sequence