Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19055

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19050 and AZOBR_RS19055 are separated by 114 nucleotidesAZOBR_RS19055 and AZOBR_RS19060 are separated by 78 nucleotidesAZOBR_RS19060 and AZOBR_RS19065 are separated by 179 nucleotides AZOBR_RS19050: AZOBR_RS19050 - phosphoesterase, at 1,043,530 to 1,044,162 _RS19050 AZOBR_RS19055: AZOBR_RS19055 - hypothetical protein, at 1,044,277 to 1,044,789 _RS19055 AZOBR_RS19060: AZOBR_RS19060 - hypothetical protein, at 1,044,868 to 1,045,239 _RS19060 AZOBR_RS19065: AZOBR_RS19065 - anthranilate phosphoribosyltransferase, at 1,045,419 to 1,046,909 _RS19065 Position (kb) 1044 1045Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1043.335 kb on - strandat 1043.336 kb on - strandat 1043.342 kb on - strandat 1043.995 kb on + strand, within AZOBR_RS19050at 1043.995 kb on + strand, within AZOBR_RS19050at 1043.995 kb on + strand, within AZOBR_RS19050at 1043.995 kb on + strand, within AZOBR_RS19050at 1043.995 kb on + strand, within AZOBR_RS19050at 1043.996 kb on - strand, within AZOBR_RS19050at 1043.996 kb on - strand, within AZOBR_RS19050at 1043.996 kb on - strand, within AZOBR_RS19050at 1043.996 kb on - strand, within AZOBR_RS19050at 1043.996 kb on - strand, within AZOBR_RS19050at 1043.996 kb on - strand, within AZOBR_RS19050at 1043.996 kb on - strand, within AZOBR_RS19050at 1043.996 kb on - strand, within AZOBR_RS19050at 1044.049 kb on + strand, within AZOBR_RS19050at 1044.050 kb on - strand, within AZOBR_RS19050at 1045.036 kb on + strand, within AZOBR_RS19060at 1045.037 kb on - strand, within AZOBR_RS19060at 1045.040 kb on - strand, within AZOBR_RS19060at 1045.040 kb on - strand, within AZOBR_RS19060

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,043,335 - +0.6
1,043,336 - -0.1
1,043,342 - -1.3
1,043,995 + AZOBR_RS19050 0.73 +0.2
1,043,995 + AZOBR_RS19050 0.73 +0.0
1,043,995 + AZOBR_RS19050 0.73 +1.3
1,043,995 + AZOBR_RS19050 0.73 -0.6
1,043,995 + AZOBR_RS19050 0.73 -0.7
1,043,996 - AZOBR_RS19050 0.74 -0.8
1,043,996 - AZOBR_RS19050 0.74 +0.1
1,043,996 - AZOBR_RS19050 0.74 -1.8
1,043,996 - AZOBR_RS19050 0.74 +0.9
1,043,996 - AZOBR_RS19050 0.74 +0.3
1,043,996 - AZOBR_RS19050 0.74 -1.0
1,043,996 - AZOBR_RS19050 0.74 +1.7
1,043,996 - AZOBR_RS19050 0.74 -3.9
1,044,049 + AZOBR_RS19050 0.82 +0.9
1,044,050 - AZOBR_RS19050 0.82 +2.1
1,045,036 + AZOBR_RS19060 0.45 +0.2
1,045,037 - AZOBR_RS19060 0.45 +2.2
1,045,040 - AZOBR_RS19060 0.46 +0.5
1,045,040 - AZOBR_RS19060 0.46 +0.7

Or see this region's nucleotide sequence