Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16290 and AZOBR_RS16295 overlap by 13 nucleotides AZOBR_RS16295 and AZOBR_RS16300 are separated by 291 nucleotides AZOBR_RS16300 and AZOBR_RS16305 are separated by 172 nucleotides
AZOBR_RS16290: AZOBR_RS16290 - phosphoribosylaminoimidazole synthetase, at 404,462 to 405,544
_RS16290
AZOBR_RS16295: AZOBR_RS16295 - phosphoribosylglycinamide formyltransferase, at 405,532 to 406,200
_RS16295
AZOBR_RS16300: AZOBR_RS16300 - hypothetical protein, at 406,492 to 406,971
_RS16300
AZOBR_RS16305: AZOBR_RS16305 - nucleoside diphosphate kinase, at 407,144 to 407,566
_RS16305
Position (kb) 406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 405.971 kb on - strand, within AZOBR_RS16295 at 406.494 kb on - strand at 406.853 kb on + strand, within AZOBR_RS16300 at 406.986 kb on + strand at 406.987 kb on - strand at 406.992 kb on + strand at 407.638 kb on - strand at 407.638 kb on - strand at 407.640 kb on - strand at 407.642 kb on - strand at 407.642 kb on - strand at 407.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 405,971 - AZOBR_RS16295 0.66 -3.6 406,494 - -1.7 406,853 + AZOBR_RS16300 0.75 -0.9 406,986 + -0.5 406,987 - -1.9 406,992 + -0.9 407,638 - -1.6 407,638 - +1.1 407,640 - +1.0 407,642 - +0.4 407,642 - +0.3 407,768 - -0.5
Or see this region's nucleotide sequence