Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12075

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12070 and AZOBR_RS12075 are separated by 113 nucleotidesAZOBR_RS12075 and AZOBR_RS12080 are separated by 47 nucleotides AZOBR_RS12070: AZOBR_RS12070 - peptidoglycan-binding protein, at 2,537,308 to 2,538,474 _RS12070 AZOBR_RS12075: AZOBR_RS12075 - hypothetical protein, at 2,538,588 to 2,539,130 _RS12075 AZOBR_RS12080: AZOBR_RS12080 - hypothetical protein, at 2,539,178 to 2,539,471 _RS12080 Position (kb) 2538 2539 2540Strain fitness (log2 ratio) -2 -1 0 1 2at 2537.995 kb on + strand, within AZOBR_RS12070at 2537.995 kb on + strand, within AZOBR_RS12070at 2537.996 kb on - strand, within AZOBR_RS12070at 2538.127 kb on + strand, within AZOBR_RS12070at 2538.135 kb on - strand, within AZOBR_RS12070at 2538.136 kb on + strand, within AZOBR_RS12070at 2538.136 kb on + strand, within AZOBR_RS12070at 2538.136 kb on + strand, within AZOBR_RS12070at 2538.136 kb on + strand, within AZOBR_RS12070at 2538.136 kb on + strand, within AZOBR_RS12070at 2538.137 kb on - strand, within AZOBR_RS12070at 2538.137 kb on - strand, within AZOBR_RS12070at 2538.137 kb on - strand, within AZOBR_RS12070at 2538.137 kb on - strand, within AZOBR_RS12070at 2538.137 kb on - strand, within AZOBR_RS12070at 2538.137 kb on - strand, within AZOBR_RS12070at 2538.137 kb on - strand, within AZOBR_RS12070at 2538.151 kb on - strand, within AZOBR_RS12070at 2538.397 kb on + strandat 2538.397 kb on + strandat 2538.398 kb on - strandat 2538.398 kb on - strandat 2538.398 kb on - strandat 2538.398 kb on - strandat 2538.631 kb on + strandat 2538.631 kb on + strandat 2538.631 kb on + strandat 2538.631 kb on + strandat 2538.632 kb on - strandat 2538.632 kb on - strandat 2538.632 kb on - strandat 2538.632 kb on - strandat 2538.697 kb on + strand, within AZOBR_RS12075at 2538.697 kb on + strand, within AZOBR_RS12075at 2538.697 kb on + strand, within AZOBR_RS12075at 2538.698 kb on - strand, within AZOBR_RS12075at 2538.817 kb on + strand, within AZOBR_RS12075at 2539.070 kb on - strand, within AZOBR_RS12075at 2539.070 kb on - strand, within AZOBR_RS12075at 2539.070 kb on - strand, within AZOBR_RS12075at 2539.143 kb on + strandat 2539.144 kb on - strandat 2539.342 kb on - strand, within AZOBR_RS12080at 2539.342 kb on - strand, within AZOBR_RS12080at 2539.342 kb on - strand, within AZOBR_RS12080

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,537,995 + AZOBR_RS12070 0.59 +0.3
2,537,995 + AZOBR_RS12070 0.59 -1.5
2,537,996 - AZOBR_RS12070 0.59 +0.5
2,538,127 + AZOBR_RS12070 0.70 -1.5
2,538,135 - AZOBR_RS12070 0.71 -0.1
2,538,136 + AZOBR_RS12070 0.71 +0.3
2,538,136 + AZOBR_RS12070 0.71 +1.1
2,538,136 + AZOBR_RS12070 0.71 -1.1
2,538,136 + AZOBR_RS12070 0.71 +0.2
2,538,136 + AZOBR_RS12070 0.71 +0.3
2,538,137 - AZOBR_RS12070 0.71 +0.4
2,538,137 - AZOBR_RS12070 0.71 -2.7
2,538,137 - AZOBR_RS12070 0.71 +1.1
2,538,137 - AZOBR_RS12070 0.71 -0.1
2,538,137 - AZOBR_RS12070 0.71 +1.4
2,538,137 - AZOBR_RS12070 0.71 +1.6
2,538,137 - AZOBR_RS12070 0.71 -0.1
2,538,151 - AZOBR_RS12070 0.72 +1.6
2,538,397 + -2.5
2,538,397 + -2.0
2,538,398 - +0.7
2,538,398 - -0.6
2,538,398 - +0.5
2,538,398 - +0.2
2,538,631 + -1.0
2,538,631 + +0.4
2,538,631 + +1.8
2,538,631 + -1.1
2,538,632 - +1.5
2,538,632 - -2.4
2,538,632 - +0.9
2,538,632 - +0.9
2,538,697 + AZOBR_RS12075 0.20 +0.8
2,538,697 + AZOBR_RS12075 0.20 -0.2
2,538,697 + AZOBR_RS12075 0.20 +0.8
2,538,698 - AZOBR_RS12075 0.20 +0.6
2,538,817 + AZOBR_RS12075 0.42 -0.2
2,539,070 - AZOBR_RS12075 0.89 +0.6
2,539,070 - AZOBR_RS12075 0.89 +0.8
2,539,070 - AZOBR_RS12075 0.89 +1.6
2,539,143 + -0.5
2,539,144 - +0.6
2,539,342 - AZOBR_RS12080 0.56 +0.9
2,539,342 - AZOBR_RS12080 0.56 -1.6
2,539,342 - AZOBR_RS12080 0.56 +0.2

Or see this region's nucleotide sequence