Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11885

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11880 and AZOBR_RS11885 are separated by 169 nucleotidesAZOBR_RS11885 and AZOBR_RS11890 are separated by 81 nucleotides AZOBR_RS11880: AZOBR_RS11880 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,498,618 to 2,499,772 _RS11880 AZOBR_RS11885: AZOBR_RS11885 - glutamate--cysteine ligase, at 2,499,942 to 2,501,306 _RS11885 AZOBR_RS11890: AZOBR_RS11890 - 16S rRNA methyltransferase, at 2,501,388 to 2,502,182 _RS11890 Position (kb) 2499 2500 2501 2502Strain fitness (log2 ratio) -2 -1 0 1 2at 2498.997 kb on - strand, within AZOBR_RS11880at 2499.236 kb on + strand, within AZOBR_RS11880at 2499.236 kb on + strand, within AZOBR_RS11880at 2499.237 kb on - strand, within AZOBR_RS11880at 2499.321 kb on - strand, within AZOBR_RS11880at 2499.321 kb on - strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.572 kb on + strand, within AZOBR_RS11880at 2499.573 kb on - strand, within AZOBR_RS11880at 2499.573 kb on - strand, within AZOBR_RS11880at 2499.573 kb on - strand, within AZOBR_RS11880at 2499.579 kb on - strand, within AZOBR_RS11880at 2499.771 kb on - strandat 2499.771 kb on - strandat 2499.947 kb on - strandat 2499.947 kb on - strandat 2499.952 kb on + strandat 2501.661 kb on + strand, within AZOBR_RS11890at 2501.661 kb on + strand, within AZOBR_RS11890at 2501.662 kb on - strand, within AZOBR_RS11890at 2501.662 kb on - strand, within AZOBR_RS11890at 2501.662 kb on - strand, within AZOBR_RS11890at 2501.686 kb on + strand, within AZOBR_RS11890at 2501.693 kb on + strand, within AZOBR_RS11890at 2501.693 kb on + strand, within AZOBR_RS11890at 2501.693 kb on + strand, within AZOBR_RS11890at 2501.693 kb on + strand, within AZOBR_RS11890at 2501.694 kb on - strand, within AZOBR_RS11890at 2501.694 kb on - strand, within AZOBR_RS11890at 2502.154 kb on + strandat 2502.154 kb on + strandat 2502.154 kb on + strandat 2502.154 kb on + strandat 2502.154 kb on + strandat 2502.214 kb on - strandat 2502.214 kb on - strandat 2502.215 kb on + strandat 2502.216 kb on - strandat 2502.216 kb on - strandat 2502.216 kb on - strandat 2502.221 kb on + strandat 2502.273 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,498,997 - AZOBR_RS11880 0.33 -1.8
2,499,236 + AZOBR_RS11880 0.54 +0.5
2,499,236 + AZOBR_RS11880 0.54 +0.4
2,499,237 - AZOBR_RS11880 0.54 +0.4
2,499,321 - AZOBR_RS11880 0.61 -0.1
2,499,321 - AZOBR_RS11880 0.61 +1.0
2,499,572 + AZOBR_RS11880 0.83 +1.2
2,499,572 + AZOBR_RS11880 0.83 +1.6
2,499,572 + AZOBR_RS11880 0.83 +0.5
2,499,572 + AZOBR_RS11880 0.83 +0.9
2,499,572 + AZOBR_RS11880 0.83 +0.7
2,499,573 - AZOBR_RS11880 0.83 +0.3
2,499,573 - AZOBR_RS11880 0.83 -0.1
2,499,573 - AZOBR_RS11880 0.83 +0.2
2,499,579 - AZOBR_RS11880 0.83 +0.7
2,499,771 - -2.1
2,499,771 - +0.5
2,499,947 - -0.3
2,499,947 - -1.3
2,499,952 + -1.5
2,501,661 + AZOBR_RS11890 0.34 +0.8
2,501,661 + AZOBR_RS11890 0.34 -0.0
2,501,662 - AZOBR_RS11890 0.34 +0.6
2,501,662 - AZOBR_RS11890 0.34 -0.4
2,501,662 - AZOBR_RS11890 0.34 +0.6
2,501,686 + AZOBR_RS11890 0.37 -1.3
2,501,693 + AZOBR_RS11890 0.38 +0.4
2,501,693 + AZOBR_RS11890 0.38 -0.2
2,501,693 + AZOBR_RS11890 0.38 +0.8
2,501,693 + AZOBR_RS11890 0.38 +0.6
2,501,694 - AZOBR_RS11890 0.38 +0.4
2,501,694 - AZOBR_RS11890 0.38 +1.3
2,502,154 + +0.8
2,502,154 + +1.0
2,502,154 + -2.4
2,502,154 + +0.6
2,502,154 + +0.7
2,502,214 - +1.9
2,502,214 - -0.1
2,502,215 + +2.5
2,502,216 - +0.3
2,502,216 - +0.1
2,502,216 - -1.9
2,502,221 + -1.3
2,502,273 + -0.1

Or see this region's nucleotide sequence