Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05465

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05455 and AZOBR_RS05460 are separated by 229 nucleotidesAZOBR_RS05460 and AZOBR_RS05465 are separated by 210 nucleotidesAZOBR_RS05465 and AZOBR_RS05470 are separated by 5 nucleotides AZOBR_RS05455: AZOBR_RS05455 - chemotaxis protein, at 1,161,554 to 1,163,545 _RS05455 AZOBR_RS05460: AZOBR_RS05460 - hypothetical protein, at 1,163,775 to 1,164,074 _RS05460 AZOBR_RS05465: AZOBR_RS05465 - ferredoxin, at 1,164,285 to 1,164,569 _RS05465 AZOBR_RS05470: AZOBR_RS05470 - protein fixC, at 1,164,575 to 1,165,876 _RS05470 Position (kb) 1164 1165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1163.370 kb on + strandat 1163.370 kb on + strandat 1163.742 kb on - strandat 1163.812 kb on + strand, within AZOBR_RS05460at 1163.813 kb on - strand, within AZOBR_RS05460at 1163.813 kb on - strand, within AZOBR_RS05460at 1163.813 kb on - strand, within AZOBR_RS05460at 1163.827 kb on + strand, within AZOBR_RS05460at 1163.827 kb on + strand, within AZOBR_RS05460at 1163.828 kb on - strand, within AZOBR_RS05460at 1163.854 kb on + strand, within AZOBR_RS05460at 1163.854 kb on + strand, within AZOBR_RS05460at 1163.854 kb on + strand, within AZOBR_RS05460at 1163.855 kb on - strand, within AZOBR_RS05460at 1163.855 kb on - strand, within AZOBR_RS05460at 1163.992 kb on + strand, within AZOBR_RS05460at 1163.992 kb on + strand, within AZOBR_RS05460at 1163.992 kb on + strand, within AZOBR_RS05460at 1163.992 kb on + strand, within AZOBR_RS05460at 1163.993 kb on - strand, within AZOBR_RS05460at 1163.993 kb on - strand, within AZOBR_RS05460at 1163.993 kb on - strand, within AZOBR_RS05460at 1164.004 kb on + strand, within AZOBR_RS05460at 1164.004 kb on + strand, within AZOBR_RS05460at 1164.004 kb on + strand, within AZOBR_RS05460at 1164.005 kb on - strand, within AZOBR_RS05460at 1164.005 kb on - strand, within AZOBR_RS05460at 1164.114 kb on + strandat 1164.114 kb on + strandat 1164.114 kb on + strandat 1164.115 kb on - strandat 1164.226 kb on - strandat 1164.226 kb on - strandat 1164.296 kb on + strandat 1164.296 kb on + strandat 1164.296 kb on + strandat 1164.299 kb on - strandat 1164.299 kb on - strandat 1164.430 kb on + strand, within AZOBR_RS05465at 1164.431 kb on - strand, within AZOBR_RS05465at 1164.431 kb on - strand, within AZOBR_RS05465at 1164.533 kb on - strand, within AZOBR_RS05465at 1164.544 kb on + strandat 1164.832 kb on - strand, within AZOBR_RS05470at 1164.994 kb on - strand, within AZOBR_RS05470at 1165.014 kb on + strand, within AZOBR_RS05470at 1165.015 kb on - strand, within AZOBR_RS05470at 1165.015 kb on - strand, within AZOBR_RS05470at 1165.045 kb on - strand, within AZOBR_RS05470at 1165.117 kb on - strand, within AZOBR_RS05470at 1165.191 kb on + strand, within AZOBR_RS05470

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,163,370 + +1.0
1,163,370 + +0.8
1,163,742 - -0.7
1,163,812 + AZOBR_RS05460 0.12 -4.1
1,163,813 - AZOBR_RS05460 0.13 -0.9
1,163,813 - AZOBR_RS05460 0.13 +0.0
1,163,813 - AZOBR_RS05460 0.13 +0.6
1,163,827 + AZOBR_RS05460 0.17 -1.1
1,163,827 + AZOBR_RS05460 0.17 -1.8
1,163,828 - AZOBR_RS05460 0.18 +0.6
1,163,854 + AZOBR_RS05460 0.26 +0.7
1,163,854 + AZOBR_RS05460 0.26 +0.6
1,163,854 + AZOBR_RS05460 0.26 +0.7
1,163,855 - AZOBR_RS05460 0.27 -0.5
1,163,855 - AZOBR_RS05460 0.27 +0.5
1,163,992 + AZOBR_RS05460 0.72 +1.5
1,163,992 + AZOBR_RS05460 0.72 +0.4
1,163,992 + AZOBR_RS05460 0.72 -0.2
1,163,992 + AZOBR_RS05460 0.72 +2.4
1,163,993 - AZOBR_RS05460 0.73 -1.3
1,163,993 - AZOBR_RS05460 0.73 -1.1
1,163,993 - AZOBR_RS05460 0.73 -0.0
1,164,004 + AZOBR_RS05460 0.76 +0.4
1,164,004 + AZOBR_RS05460 0.76 -2.7
1,164,004 + AZOBR_RS05460 0.76 +0.5
1,164,005 - AZOBR_RS05460 0.77 -0.7
1,164,005 - AZOBR_RS05460 0.77 +0.3
1,164,114 + -0.5
1,164,114 + +1.7
1,164,114 + -2.3
1,164,115 - +2.2
1,164,226 - -0.2
1,164,226 - +1.1
1,164,296 + +0.5
1,164,296 + +0.0
1,164,296 + -1.2
1,164,299 - -1.4
1,164,299 - -0.9
1,164,430 + AZOBR_RS05465 0.51 +1.2
1,164,431 - AZOBR_RS05465 0.51 +0.6
1,164,431 - AZOBR_RS05465 0.51 +0.4
1,164,533 - AZOBR_RS05465 0.87 -0.4
1,164,544 + -0.0
1,164,832 - AZOBR_RS05470 0.20 +1.3
1,164,994 - AZOBR_RS05470 0.32 +1.2
1,165,014 + AZOBR_RS05470 0.34 -0.2
1,165,015 - AZOBR_RS05470 0.34 -0.4
1,165,015 - AZOBR_RS05470 0.34 -3.1
1,165,045 - AZOBR_RS05470 0.36 -0.5
1,165,117 - AZOBR_RS05470 0.42 +0.0
1,165,191 + AZOBR_RS05470 0.47 -0.8

Or see this region's nucleotide sequence