Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05115

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS05110 and AZOBR_RS05115 are separated by 164 nucleotidesAZOBR_RS05115 and AZOBR_RS05120 are separated by 95 nucleotides AZOBR_RS05110: AZOBR_RS05110 - hypothetical protein, at 1,084,408 to 1,085,421 _RS05110 AZOBR_RS05115: AZOBR_RS05115 - hypothetical protein, at 1,085,586 to 1,085,957 _RS05115 AZOBR_RS05120: AZOBR_RS05120 - hypothetical protein, at 1,086,053 to 1,086,544 _RS05120 Position (kb) 1085 1086Strain fitness (log2 ratio) -2 -1 0 1at 1084.702 kb on + strand, within AZOBR_RS05110at 1084.702 kb on + strand, within AZOBR_RS05110at 1085.222 kb on - strand, within AZOBR_RS05110at 1085.333 kb on - strandat 1085.440 kb on + strandat 1085.491 kb on + strandat 1085.956 kb on - strandat 1085.982 kb on + strandat 1085.982 kb on + strandat 1085.983 kb on - strandat 1085.983 kb on - strandat 1086.036 kb on + strandat 1086.099 kb on + strandat 1086.099 kb on + strandat 1086.842 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
1,084,702 + AZOBR_RS05110 0.29 +1.2
1,084,702 + AZOBR_RS05110 0.29 -2.1
1,085,222 - AZOBR_RS05110 0.80 -1.3
1,085,333 - +0.2
1,085,440 + +0.6
1,085,491 + -0.6
1,085,956 - -0.3
1,085,982 + -0.3
1,085,982 + -0.2
1,085,983 - +0.9
1,085,983 - +0.5
1,086,036 + -0.6
1,086,099 + -1.3
1,086,099 + +1.0
1,086,842 + -0.2

Or see this region's nucleotide sequence