Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02940

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02930 and AZOBR_RS02935 are separated by 218 nucleotidesAZOBR_RS02935 and AZOBR_RS02940 overlap by 1 nucleotidesAZOBR_RS02940 and AZOBR_RS02945 are separated by 117 nucleotides AZOBR_RS02930: AZOBR_RS02930 - hypothetical protein, at 621,052 to 621,579 _RS02930 AZOBR_RS02935: AZOBR_RS02935 - small component of pyruvate transporter (yjcH-like) (from data), at 621,798 to 622,100 _RS02935 AZOBR_RS02940: AZOBR_RS02940 - large component of pyruvate transporter (actP-like) (from data), at 622,100 to 623,818 _RS02940 AZOBR_RS02945: AZOBR_RS02945 - hypothetical protein, at 623,936 to 625,753 _RS02945 Position (kb) 622 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 621.121 kb on + strand, within AZOBR_RS02930at 621.121 kb on + strand, within AZOBR_RS02930at 621.122 kb on - strand, within AZOBR_RS02930at 621.122 kb on - strand, within AZOBR_RS02930at 621.460 kb on + strand, within AZOBR_RS02930at 621.596 kb on - strandat 621.596 kb on - strandat 621.596 kb on - strandat 621.632 kb on + strandat 621.797 kb on + strandat 621.797 kb on + strandat 621.798 kb on - strandat 621.860 kb on + strand, within AZOBR_RS02935at 621.903 kb on + strand, within AZOBR_RS02935at 621.904 kb on - strand, within AZOBR_RS02935at 621.904 kb on - strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.035 kb on + strand, within AZOBR_RS02935at 622.036 kb on - strand, within AZOBR_RS02935at 622.036 kb on - strand, within AZOBR_RS02935at 622.268 kb on + strandat 622.268 kb on + strandat 622.269 kb on - strandat 622.308 kb on - strand, within AZOBR_RS02940at 622.308 kb on - strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.364 kb on + strand, within AZOBR_RS02940at 622.365 kb on - strand, within AZOBR_RS02940at 622.365 kb on - strand, within AZOBR_RS02940at 622.508 kb on + strand, within AZOBR_RS02940at 622.508 kb on + strand, within AZOBR_RS02940at 622.508 kb on + strand, within AZOBR_RS02940at 622.508 kb on + strand, within AZOBR_RS02940at 622.509 kb on - strand, within AZOBR_RS02940at 622.532 kb on + strand, within AZOBR_RS02940at 622.533 kb on - strand, within AZOBR_RS02940at 622.598 kb on + strand, within AZOBR_RS02940at 622.598 kb on + strand, within AZOBR_RS02940at 622.598 kb on + strand, within AZOBR_RS02940at 622.599 kb on - strand, within AZOBR_RS02940at 622.599 kb on - strand, within AZOBR_RS02940at 622.599 kb on - strand, within AZOBR_RS02940at 622.599 kb on - strand, within AZOBR_RS02940at 622.701 kb on - strand, within AZOBR_RS02940at 623.016 kb on - strand, within AZOBR_RS02940at 623.016 kb on - strand, within AZOBR_RS02940at 623.036 kb on + strand, within AZOBR_RS02940at 623.042 kb on + strand, within AZOBR_RS02940at 623.042 kb on + strand, within AZOBR_RS02940at 623.327 kb on + strand, within AZOBR_RS02940at 623.327 kb on + strand, within AZOBR_RS02940at 623.328 kb on - strand, within AZOBR_RS02940at 623.756 kb on + strandat 623.757 kb on - strandat 623.757 kb on - strandat 623.768 kb on + strandat 623.768 kb on + strandat 623.769 kb on - strandat 623.816 kb on + strandat 623.816 kb on + strandat 623.862 kb on + strandat 624.246 kb on + strand, within AZOBR_RS02945at 624.384 kb on - strand, within AZOBR_RS02945at 624.384 kb on - strand, within AZOBR_RS02945at 624.384 kb on - strand, within AZOBR_RS02945

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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621,121 + AZOBR_RS02930 0.13 -1.6
621,121 + AZOBR_RS02930 0.13 -1.1
621,122 - AZOBR_RS02930 0.13 +0.4
621,122 - AZOBR_RS02930 0.13 +0.9
621,460 + AZOBR_RS02930 0.77 -0.4
621,596 - -0.4
621,596 - -2.6
621,596 - -0.1
621,632 + -1.6
621,797 + +2.6
621,797 + -0.5
621,798 - +1.8
621,860 + AZOBR_RS02935 0.20 +1.6
621,903 + AZOBR_RS02935 0.35 -2.7
621,904 - AZOBR_RS02935 0.35 +0.3
621,904 - AZOBR_RS02935 0.35 +0.7
622,035 + AZOBR_RS02935 0.78 -0.0
622,035 + AZOBR_RS02935 0.78 +0.7
622,035 + AZOBR_RS02935 0.78 -0.6
622,035 + AZOBR_RS02935 0.78 +0.2
622,035 + AZOBR_RS02935 0.78 +1.4
622,036 - AZOBR_RS02935 0.79 +0.3
622,036 - AZOBR_RS02935 0.79 +0.6
622,268 + +0.2
622,268 + +0.2
622,269 - +0.2
622,308 - AZOBR_RS02940 0.12 -0.5
622,308 - AZOBR_RS02940 0.12 +1.1
622,364 + AZOBR_RS02940 0.15 -0.7
622,364 + AZOBR_RS02940 0.15 +0.6
622,364 + AZOBR_RS02940 0.15 +0.8
622,364 + AZOBR_RS02940 0.15 +0.1
622,364 + AZOBR_RS02940 0.15 +1.7
622,365 - AZOBR_RS02940 0.15 +0.7
622,365 - AZOBR_RS02940 0.15 -3.3
622,508 + AZOBR_RS02940 0.24 -1.5
622,508 + AZOBR_RS02940 0.24 +0.2
622,508 + AZOBR_RS02940 0.24 +0.7
622,508 + AZOBR_RS02940 0.24 -0.4
622,509 - AZOBR_RS02940 0.24 +0.3
622,532 + AZOBR_RS02940 0.25 +1.3
622,533 - AZOBR_RS02940 0.25 -0.1
622,598 + AZOBR_RS02940 0.29 +0.9
622,598 + AZOBR_RS02940 0.29 +0.7
622,598 + AZOBR_RS02940 0.29 +1.0
622,599 - AZOBR_RS02940 0.29 +0.7
622,599 - AZOBR_RS02940 0.29 -0.0
622,599 - AZOBR_RS02940 0.29 -1.1
622,599 - AZOBR_RS02940 0.29 -0.0
622,701 - AZOBR_RS02940 0.35 -2.8
623,016 - AZOBR_RS02940 0.53 +0.2
623,016 - AZOBR_RS02940 0.53 -0.0
623,036 + AZOBR_RS02940 0.54 +0.4
623,042 + AZOBR_RS02940 0.55 -0.7
623,042 + AZOBR_RS02940 0.55 +0.6
623,327 + AZOBR_RS02940 0.71 -0.6
623,327 + AZOBR_RS02940 0.71 +0.5
623,328 - AZOBR_RS02940 0.71 +0.6
623,756 + +0.6
623,757 - +0.8
623,757 - +1.6
623,768 + +0.8
623,768 + +1.9
623,769 - -2.7
623,816 + +0.8
623,816 + +0.5
623,862 + +0.0
624,246 + AZOBR_RS02945 0.17 -1.2
624,384 - AZOBR_RS02945 0.25 +0.3
624,384 - AZOBR_RS02945 0.25 -0.1
624,384 - AZOBR_RS02945 0.25 -2.7

Or see this region's nucleotide sequence