Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26770

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26765 and AO353_26770 are separated by 126 nucleotidesAO353_26770 and AO353_26775 overlap by 13 nucleotidesAO353_26775 and AO353_26780 are separated by 96 nucleotides AO353_26765: AO353_26765 - magnesium-translocating P-type ATPase, at 5,860,569 to 5,863,283 _26765 AO353_26770: AO353_26770 - Na/Pi cotransporter, at 5,863,410 to 5,865,104 _26770 AO353_26775: AO353_26775 - hypothetical protein, at 5,865,092 to 5,865,445 _26775 AO353_26780: AO353_26780 - DNA topoisomerase III, at 5,865,542 to 5,867,485 _26780 Position (kb) 5863 5864 5865 5866Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5862.548 kb on + strand, within AO353_26765at 5862.675 kb on + strand, within AO353_26765at 5862.676 kb on - strand, within AO353_26765at 5862.792 kb on + strand, within AO353_26765at 5862.792 kb on + strand, within AO353_26765at 5862.792 kb on + strand, within AO353_26765at 5862.792 kb on + strand, within AO353_26765at 5862.793 kb on - strand, within AO353_26765at 5862.793 kb on - strand, within AO353_26765at 5862.793 kb on - strand, within AO353_26765at 5862.793 kb on - strand, within AO353_26765at 5862.793 kb on - strand, within AO353_26765at 5862.840 kb on + strand, within AO353_26765at 5862.948 kb on + strand, within AO353_26765at 5862.949 kb on - strand, within AO353_26765at 5862.949 kb on - strand, within AO353_26765at 5862.949 kb on - strand, within AO353_26765at 5863.131 kb on + strandat 5863.131 kb on + strandat 5863.131 kb on + strandat 5863.132 kb on - strandat 5863.132 kb on - strandat 5863.132 kb on - strandat 5863.132 kb on - strandat 5863.132 kb on - strandat 5863.132 kb on - strandat 5863.132 kb on - strandat 5863.132 kb on - strandat 5863.188 kb on + strandat 5863.188 kb on + strandat 5863.189 kb on - strandat 5863.221 kb on + strandat 5863.222 kb on - strandat 5863.254 kb on + strandat 5863.254 kb on + strandat 5863.254 kb on + strandat 5863.255 kb on - strandat 5863.255 kb on - strandat 5863.255 kb on - strandat 5863.351 kb on - strandat 5863.351 kb on - strandat 5863.351 kb on - strandat 5863.353 kb on - strandat 5863.353 kb on - strandat 5863.353 kb on - strandat 5863.353 kb on - strandat 5863.391 kb on + strandat 5863.391 kb on + strandat 5863.392 kb on - strandat 5863.392 kb on - strandat 5863.392 kb on - strandat 5863.421 kb on + strandat 5863.421 kb on + strandat 5863.421 kb on + strandat 5863.421 kb on + strandat 5863.421 kb on + strandat 5863.421 kb on + strandat 5863.421 kb on + strandat 5863.422 kb on - strandat 5863.422 kb on - strandat 5863.422 kb on - strandat 5863.422 kb on - strandat 5863.422 kb on - strandat 5863.422 kb on - strandat 5863.422 kb on - strandat 5863.422 kb on - strandat 5863.422 kb on - strandat 5863.422 kb on - strandat 5863.426 kb on + strandat 5863.426 kb on + strandat 5863.427 kb on - strandat 5863.427 kb on - strandat 5863.427 kb on - strandat 5863.427 kb on - strandat 5863.475 kb on + strandat 5863.475 kb on + strandat 5863.476 kb on - strandat 5863.746 kb on - strand, within AO353_26770at 5863.798 kb on - strand, within AO353_26770at 5863.853 kb on + strand, within AO353_26770at 5863.853 kb on + strand, within AO353_26770at 5863.853 kb on + strand, within AO353_26770at 5863.853 kb on + strand, within AO353_26770at 5863.853 kb on + strand, within AO353_26770at 5863.853 kb on + strand, within AO353_26770at 5863.853 kb on + strand, within AO353_26770at 5863.853 kb on + strand, within AO353_26770at 5863.853 kb on + strand, within AO353_26770at 5863.854 kb on - strand, within AO353_26770at 5863.854 kb on - strand, within AO353_26770at 5863.854 kb on - strand, within AO353_26770at 5863.854 kb on - strand, within AO353_26770at 5863.854 kb on - strand, within AO353_26770at 5863.854 kb on - strand, within AO353_26770at 5863.854 kb on - strand, within AO353_26770at 5863.854 kb on - strand, within AO353_26770at 5863.854 kb on - strand, within AO353_26770at 5864.367 kb on + strand, within AO353_26770at 5864.367 kb on + strand, within AO353_26770at 5864.367 kb on + strand, within AO353_26770at 5864.516 kb on - strandat 5864.516 kb on - strandat 5864.565 kb on + strand, within AO353_26770at 5864.829 kb on + strand, within AO353_26770at 5864.830 kb on - strand, within AO353_26770at 5864.830 kb on - strand, within AO353_26770at 5865.053 kb on + strandat 5865.054 kb on - strandat 5865.120 kb on - strandat 5865.120 kb on - strandat 5865.122 kb on + strandat 5865.122 kb on + strandat 5865.122 kb on + strandat 5865.122 kb on + strandat 5865.122 kb on + strandat 5865.122 kb on + strandat 5865.122 kb on + strandat 5865.122 kb on + strandat 5865.123 kb on - strandat 5865.123 kb on - strandat 5865.123 kb on - strandat 5865.137 kb on - strand, within AO353_26775at 5865.496 kb on - strandat 5865.695 kb on + strandat 5865.695 kb on + strandat 5865.696 kb on - strandat 5865.696 kb on - strandat 5865.696 kb on - strandat 5865.707 kb on + strandat 5865.709 kb on + strandat 5865.710 kb on - strandat 5865.998 kb on + strand, within AO353_26780at 5865.998 kb on + strand, within AO353_26780at 5865.998 kb on + strand, within AO353_26780at 5865.999 kb on - strand, within AO353_26780at 5865.999 kb on - strand, within AO353_26780

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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5,862,548 + AO353_26765 0.73 -0.2
5,862,675 + AO353_26765 0.78 -0.2
5,862,676 - AO353_26765 0.78 -0.8
5,862,792 + AO353_26765 0.82 +0.1
5,862,792 + AO353_26765 0.82 +0.1
5,862,792 + AO353_26765 0.82 -0.3
5,862,792 + AO353_26765 0.82 -3.2
5,862,793 - AO353_26765 0.82 +1.1
5,862,793 - AO353_26765 0.82 +1.5
5,862,793 - AO353_26765 0.82 +0.5
5,862,793 - AO353_26765 0.82 -0.2
5,862,793 - AO353_26765 0.82 -0.8
5,862,840 + AO353_26765 0.84 +0.7
5,862,948 + AO353_26765 0.88 -0.1
5,862,949 - AO353_26765 0.88 -0.7
5,862,949 - AO353_26765 0.88 -0.8
5,862,949 - AO353_26765 0.88 +1.7
5,863,131 + -0.2
5,863,131 + +1.1
5,863,131 + -0.9
5,863,132 - +0.6
5,863,132 - +0.1
5,863,132 - -0.3
5,863,132 - -0.6
5,863,132 - -1.9
5,863,132 - -0.3
5,863,132 - +0.1
5,863,132 - -0.4
5,863,188 + -0.3
5,863,188 + -0.9
5,863,189 - +0.3
5,863,221 + -1.5
5,863,222 - -0.5
5,863,254 + -0.4
5,863,254 + +0.7
5,863,254 + -0.7
5,863,255 - -1.9
5,863,255 - -0.8
5,863,255 - +0.9
5,863,351 - +0.4
5,863,351 - -0.1
5,863,351 - +0.5
5,863,353 - -0.3
5,863,353 - -0.7
5,863,353 - +1.1
5,863,353 - +0.2
5,863,391 + +0.7
5,863,391 + -0.1
5,863,392 - +0.5
5,863,392 - +0.7
5,863,392 - -0.2
5,863,421 + +0.6
5,863,421 + +0.1
5,863,421 + -1.7
5,863,421 + +0.1
5,863,421 + -0.8
5,863,421 + +1.6
5,863,421 + -1.4
5,863,422 - -1.3
5,863,422 - +0.1
5,863,422 - +1.3
5,863,422 - -0.0
5,863,422 - -0.3
5,863,422 - -1.5
5,863,422 - +1.7
5,863,422 - +0.1
5,863,422 - +0.1
5,863,422 - -0.5
5,863,426 + -0.9
5,863,426 + -0.6
5,863,427 - +1.1
5,863,427 - +0.6
5,863,427 - +0.3
5,863,427 - +0.9
5,863,475 + -0.7
5,863,475 + -0.7
5,863,476 - -1.2
5,863,746 - AO353_26770 0.20 +0.3
5,863,798 - AO353_26770 0.23 +0.5
5,863,853 + AO353_26770 0.26 +0.7
5,863,853 + AO353_26770 0.26 +0.7
5,863,853 + AO353_26770 0.26 +1.1
5,863,853 + AO353_26770 0.26 +0.1
5,863,853 + AO353_26770 0.26 -0.9
5,863,853 + AO353_26770 0.26 -1.5
5,863,853 + AO353_26770 0.26 -0.8
5,863,853 + AO353_26770 0.26 +1.1
5,863,853 + AO353_26770 0.26 +0.9
5,863,854 - AO353_26770 0.26 -1.1
5,863,854 - AO353_26770 0.26 +0.2
5,863,854 - AO353_26770 0.26 -0.6
5,863,854 - AO353_26770 0.26 -0.5
5,863,854 - AO353_26770 0.26 -0.2
5,863,854 - AO353_26770 0.26 -0.9
5,863,854 - AO353_26770 0.26 +0.1
5,863,854 - AO353_26770 0.26 -1.0
5,863,854 - AO353_26770 0.26 -0.2
5,864,367 + AO353_26770 0.56 -0.2
5,864,367 + AO353_26770 0.56 +2.1
5,864,367 + AO353_26770 0.56 -1.2
5,864,516 - -0.9
5,864,516 - +2.1
5,864,565 + AO353_26770 0.68 +0.4
5,864,829 + AO353_26770 0.84 +0.5
5,864,830 - AO353_26770 0.84 +1.1
5,864,830 - AO353_26770 0.84 -0.7
5,865,053 + +0.3
5,865,054 - -0.5
5,865,120 - -0.9
5,865,120 - +0.1
5,865,122 + -0.4
5,865,122 + +0.1
5,865,122 + +1.1
5,865,122 + -0.7
5,865,122 + -1.0
5,865,122 + -0.2
5,865,122 + +0.5
5,865,122 + +0.6
5,865,123 - -1.2
5,865,123 - -0.4
5,865,123 - -0.2
5,865,137 - AO353_26775 0.13 -1.2
5,865,496 - +0.2
5,865,695 + -0.1
5,865,695 + -0.1
5,865,696 - -0.1
5,865,696 - +0.1
5,865,696 - +1.5
5,865,707 + -0.1
5,865,709 + -0.7
5,865,710 - +1.1
5,865,998 + AO353_26780 0.23 -0.1
5,865,998 + AO353_26780 0.23 +0.1
5,865,998 + AO353_26780 0.23 -0.9
5,865,999 - AO353_26780 0.24 +0.4
5,865,999 - AO353_26780 0.24 -0.5

Or see this region's nucleotide sequence