Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_11770

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_11760 and AO353_11765 are separated by 219 nucleotidesAO353_11765 and AO353_11770 are separated by 331 nucleotidesAO353_11770 and AO353_11775 are separated by 179 nucleotides AO353_11760: AO353_11760 - ribosomal protein S6 modification protein, at 2,596,886 to 2,597,368 _11760 AO353_11765: AO353_11765 - RNA-binding protein, at 2,597,588 to 2,597,995 _11765 AO353_11770: AO353_11770 - molecular chaperone Hsp33, at 2,598,327 to 2,599,229 _11770 AO353_11775: AO353_11775 - phosphoenolpyruvate carboxykinase [ATP], at 2,599,409 to 2,600,950 _11775 Position (kb) 2598 2599 2600Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2597.423 kb on - strandat 2597.435 kb on + strandat 2597.436 kb on - strandat 2597.436 kb on - strandat 2597.442 kb on + strandat 2597.442 kb on + strandat 2597.443 kb on - strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.456 kb on + strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.457 kb on - strandat 2597.460 kb on + strandat 2597.460 kb on + strandat 2597.460 kb on + strandat 2597.460 kb on + strandat 2597.460 kb on + strandat 2597.461 kb on - strandat 2597.461 kb on - strandat 2597.461 kb on - strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.511 kb on + strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.512 kb on - strandat 2597.550 kb on + strandat 2597.550 kb on + strandat 2597.550 kb on + strandat 2597.551 kb on - strandat 2597.551 kb on - strandat 2597.553 kb on + strandat 2597.553 kb on + strandat 2597.553 kb on + strandat 2597.553 kb on + strandat 2597.554 kb on - strandat 2597.554 kb on - strandat 2597.554 kb on - strandat 2597.554 kb on - strandat 2597.554 kb on - strandat 2597.554 kb on - strandat 2597.554 kb on - strandat 2597.554 kb on - strandat 2597.566 kb on + strandat 2597.629 kb on + strand, within AO353_11765at 2597.630 kb on - strand, within AO353_11765at 2597.654 kb on + strand, within AO353_11765at 2597.654 kb on + strand, within AO353_11765at 2597.654 kb on + strand, within AO353_11765at 2597.655 kb on - strand, within AO353_11765at 2597.655 kb on - strand, within AO353_11765at 2597.655 kb on - strand, within AO353_11765at 2597.655 kb on - strand, within AO353_11765at 2597.655 kb on - strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.846 kb on + strand, within AO353_11765at 2597.847 kb on - strand, within AO353_11765at 2597.847 kb on - strand, within AO353_11765at 2597.847 kb on - strand, within AO353_11765at 2597.847 kb on - strand, within AO353_11765at 2597.847 kb on - strand, within AO353_11765at 2597.847 kb on - strand, within AO353_11765at 2597.847 kb on - strand, within AO353_11765at 2597.994 kb on - strandat 2598.079 kb on + strandat 2598.079 kb on + strandat 2598.079 kb on + strandat 2598.079 kb on + strandat 2598.080 kb on - strandat 2598.080 kb on - strandat 2598.080 kb on - strandat 2598.080 kb on - strandat 2598.164 kb on - strandat 2598.164 kb on - strandat 2598.168 kb on + strandat 2598.169 kb on - strandat 2598.181 kb on + strandat 2598.181 kb on + strandat 2598.182 kb on - strandat 2598.182 kb on - strandat 2598.225 kb on + strandat 2598.225 kb on + strandat 2598.225 kb on + strandat 2598.226 kb on - strandat 2598.246 kb on + strandat 2598.249 kb on + strandat 2598.249 kb on + strandat 2598.250 kb on - strandat 2598.250 kb on - strandat 2598.250 kb on - strandat 2598.250 kb on - strandat 2598.300 kb on + strandat 2598.300 kb on + strandat 2598.300 kb on + strandat 2598.300 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.326 kb on + strandat 2598.327 kb on - strandat 2598.327 kb on - strandat 2598.327 kb on - strandat 2598.413 kb on + strandat 2598.413 kb on + strandat 2598.413 kb on + strandat 2598.414 kb on - strandat 2598.414 kb on - strandat 2598.414 kb on - strandat 2598.414 kb on - strandat 2598.417 kb on + strandat 2598.765 kb on + strand, within AO353_11770at 2598.766 kb on - strand, within AO353_11770at 2599.247 kb on - strandat 2599.295 kb on + strandat 2599.299 kb on - strandat 2599.319 kb on + strandat 2599.346 kb on + strandat 2599.346 kb on + strandat 2599.347 kb on - strandat 2599.362 kb on - strandat 2599.365 kb on - strandat 2599.423 kb on + strandat 2599.423 kb on + strandat 2599.424 kb on - strandat 2599.433 kb on + strandat 2599.433 kb on + strandat 2599.433 kb on + strandat 2599.433 kb on + strandat 2599.434 kb on - strandat 2599.434 kb on - strandat 2599.434 kb on - strandat 2599.434 kb on - strandat 2599.434 kb on - strandat 2599.434 kb on - strandat 2599.434 kb on - strandat 2599.434 kb on - strandat 2599.704 kb on + strand, within AO353_11775at 2599.704 kb on + strand, within AO353_11775at 2599.704 kb on + strand, within AO353_11775at 2599.704 kb on + strand, within AO353_11775at 2599.704 kb on + strand, within AO353_11775at 2599.704 kb on + strand, within AO353_11775at 2599.704 kb on + strand, within AO353_11775at 2599.705 kb on - strand, within AO353_11775at 2599.705 kb on - strand, within AO353_11775at 2599.705 kb on - strand, within AO353_11775at 2599.705 kb on - strand, within AO353_11775at 2599.705 kb on - strand, within AO353_11775at 2599.705 kb on - strand, within AO353_11775at 2599.724 kb on + strand, within AO353_11775at 2599.724 kb on + strand, within AO353_11775at 2599.725 kb on - strand, within AO353_11775at 2599.725 kb on - strand, within AO353_11775at 2599.725 kb on - strand, within AO353_11775at 2599.725 kb on - strand, within AO353_11775at 2599.802 kb on + strand, within AO353_11775at 2599.802 kb on + strand, within AO353_11775at 2599.802 kb on + strand, within AO353_11775at 2599.802 kb on + strand, within AO353_11775at 2599.802 kb on + strand, within AO353_11775at 2599.802 kb on + strand, within AO353_11775at 2599.802 kb on + strand, within AO353_11775at 2599.803 kb on - strand, within AO353_11775at 2599.803 kb on - strand, within AO353_11775at 2600.180 kb on + strand, within AO353_11775at 2600.181 kb on - strand, within AO353_11775at 2600.181 kb on - strand, within AO353_11775at 2600.181 kb on - strand, within AO353_11775

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,597,423 - +1.1
2,597,435 + +0.3
2,597,436 - +2.1
2,597,436 - +0.7
2,597,442 + -1.1
2,597,442 + +0.3
2,597,443 - +1.0
2,597,456 + -0.0
2,597,456 + -0.3
2,597,456 + -1.7
2,597,456 + -1.6
2,597,456 + +0.3
2,597,456 + -1.5
2,597,456 + +0.2
2,597,456 + +0.7
2,597,456 + +0.5
2,597,456 + +0.6
2,597,456 + +1.2
2,597,456 + -0.4
2,597,457 - +0.7
2,597,457 - +1.9
2,597,457 - +0.5
2,597,457 - -0.2
2,597,457 - +1.5
2,597,457 - +0.8
2,597,457 - +0.8
2,597,457 - -0.0
2,597,457 - -0.2
2,597,457 - -0.2
2,597,457 - -0.1
2,597,457 - +0.5
2,597,460 + -1.7
2,597,460 + +0.4
2,597,460 + -0.0
2,597,460 + +0.4
2,597,460 + +0.7
2,597,461 - -0.1
2,597,461 - +1.1
2,597,461 - -0.2
2,597,511 + -0.5
2,597,511 + +2.1
2,597,511 + +0.1
2,597,511 + +1.1
2,597,511 + +1.2
2,597,511 + -0.9
2,597,511 + +0.1
2,597,511 + +0.3
2,597,511 + +0.4
2,597,511 + +0.5
2,597,511 + +1.0
2,597,511 + +1.2
2,597,511 + +2.1
2,597,511 + +0.6
2,597,511 + +0.6
2,597,511 + +1.5
2,597,511 + +0.3
2,597,511 + +0.7
2,597,511 + -0.0
2,597,511 + +0.5
2,597,511 + -0.8
2,597,512 - -0.1
2,597,512 - +0.5
2,597,512 - +1.8
2,597,512 - +0.7
2,597,512 - -1.0
2,597,512 - +0.7
2,597,512 - -0.9
2,597,512 - -0.5
2,597,512 - +0.9
2,597,512 - +0.3
2,597,512 - -0.7
2,597,512 - +1.0
2,597,512 - +0.3
2,597,512 - -0.8
2,597,512 - +2.1
2,597,512 - +1.1
2,597,512 - -0.3
2,597,512 - +0.6
2,597,512 - +1.2
2,597,550 + +0.9
2,597,550 + +0.3
2,597,550 + +0.0
2,597,551 - +1.7
2,597,551 - +0.3
2,597,553 + +0.4
2,597,553 + -0.7
2,597,553 + -0.6
2,597,553 + +1.3
2,597,554 - -0.1
2,597,554 - +0.3
2,597,554 - +0.7
2,597,554 - +2.9
2,597,554 - +1.1
2,597,554 - +0.5
2,597,554 - +0.3
2,597,554 - +0.7
2,597,566 + +0.1
2,597,629 + AO353_11765 0.10 +0.4
2,597,630 - AO353_11765 0.10 -0.5
2,597,654 + AO353_11765 0.16 +0.5
2,597,654 + AO353_11765 0.16 +1.1
2,597,654 + AO353_11765 0.16 -1.3
2,597,655 - AO353_11765 0.16 +0.5
2,597,655 - AO353_11765 0.16 +1.6
2,597,655 - AO353_11765 0.16 -0.2
2,597,655 - AO353_11765 0.16 +0.2
2,597,655 - AO353_11765 0.16 +1.1
2,597,846 + AO353_11765 0.63 +1.0
2,597,846 + AO353_11765 0.63 +1.0
2,597,846 + AO353_11765 0.63 +0.0
2,597,846 + AO353_11765 0.63 +0.6
2,597,846 + AO353_11765 0.63 +0.4
2,597,846 + AO353_11765 0.63 -0.2
2,597,846 + AO353_11765 0.63 -1.2
2,597,846 + AO353_11765 0.63 +0.9
2,597,846 + AO353_11765 0.63 -0.9
2,597,846 + AO353_11765 0.63 +0.1
2,597,846 + AO353_11765 0.63 +1.5
2,597,846 + AO353_11765 0.63 -1.1
2,597,846 + AO353_11765 0.63 -2.7
2,597,846 + AO353_11765 0.63 -0.0
2,597,846 + AO353_11765 0.63 +0.5
2,597,847 - AO353_11765 0.63 -1.3
2,597,847 - AO353_11765 0.63 +0.2
2,597,847 - AO353_11765 0.63 -0.1
2,597,847 - AO353_11765 0.63 -0.3
2,597,847 - AO353_11765 0.63 -0.5
2,597,847 - AO353_11765 0.63 +0.4
2,597,847 - AO353_11765 0.63 +2.1
2,597,994 - +1.3
2,598,079 + +0.3
2,598,079 + +0.5
2,598,079 + +0.1
2,598,079 + +1.0
2,598,080 - +0.3
2,598,080 - -0.5
2,598,080 - -0.0
2,598,080 - -0.2
2,598,164 - -0.4
2,598,164 - -0.1
2,598,168 + -0.3
2,598,169 - +0.8
2,598,181 + +1.5
2,598,181 + -0.6
2,598,182 - -0.6
2,598,182 - +1.1
2,598,225 + +0.2
2,598,225 + -0.6
2,598,225 + +0.1
2,598,226 - +0.8
2,598,246 + -0.2
2,598,249 + -0.1
2,598,249 + +0.5
2,598,250 - -0.5
2,598,250 - +1.4
2,598,250 - -0.3
2,598,250 - +0.9
2,598,300 + -0.4
2,598,300 + +0.3
2,598,300 + +0.8
2,598,300 + -0.5
2,598,326 + +0.1
2,598,326 + +0.9
2,598,326 + +0.4
2,598,326 + +0.2
2,598,326 + +0.3
2,598,326 + -1.0
2,598,326 + -0.3
2,598,326 + -0.7
2,598,326 + +1.1
2,598,326 + +0.5
2,598,326 + -0.0
2,598,326 + -0.8
2,598,326 + -0.2
2,598,327 - -0.2
2,598,327 - +1.3
2,598,327 - -0.3
2,598,413 + -0.7
2,598,413 + -0.5
2,598,413 + -0.5
2,598,414 - +1.1
2,598,414 - -0.5
2,598,414 - -1.0
2,598,414 - -0.7
2,598,417 + +1.5
2,598,765 + AO353_11770 0.49 -0.8
2,598,766 - AO353_11770 0.49 -2.1
2,599,247 - +0.3
2,599,295 + +1.4
2,599,299 - -1.1
2,599,319 + +0.7
2,599,346 + -0.9
2,599,346 + +0.0
2,599,347 - -1.3
2,599,362 - +1.0
2,599,365 - +0.9
2,599,423 + +0.5
2,599,423 + -2.4
2,599,424 - -0.9
2,599,433 + -1.2
2,599,433 + -0.7
2,599,433 + -2.8
2,599,433 + +1.1
2,599,434 - -0.9
2,599,434 - -1.6
2,599,434 - -2.3
2,599,434 - +0.3
2,599,434 - -1.8
2,599,434 - -0.7
2,599,434 - -0.0
2,599,434 - -1.0
2,599,704 + AO353_11775 0.19 -1.4
2,599,704 + AO353_11775 0.19 -0.9
2,599,704 + AO353_11775 0.19 -0.2
2,599,704 + AO353_11775 0.19 -2.2
2,599,704 + AO353_11775 0.19 -0.5
2,599,704 + AO353_11775 0.19 -0.2
2,599,704 + AO353_11775 0.19 -1.0
2,599,705 - AO353_11775 0.19 -3.2
2,599,705 - AO353_11775 0.19 -2.8
2,599,705 - AO353_11775 0.19 -3.1
2,599,705 - AO353_11775 0.19 +0.1
2,599,705 - AO353_11775 0.19 -1.3
2,599,705 - AO353_11775 0.19 -0.2
2,599,724 + AO353_11775 0.20 -1.0
2,599,724 + AO353_11775 0.20 -1.3
2,599,725 - AO353_11775 0.20 -2.1
2,599,725 - AO353_11775 0.20 -1.5
2,599,725 - AO353_11775 0.20 +0.8
2,599,725 - AO353_11775 0.20 -0.2
2,599,802 + AO353_11775 0.25 -2.8
2,599,802 + AO353_11775 0.25 -1.7
2,599,802 + AO353_11775 0.25 -2.2
2,599,802 + AO353_11775 0.25 -1.7
2,599,802 + AO353_11775 0.25 -1.7
2,599,802 + AO353_11775 0.25 -1.7
2,599,802 + AO353_11775 0.25 -1.5
2,599,803 - AO353_11775 0.26 -2.4
2,599,803 - AO353_11775 0.26 -0.7
2,600,180 + AO353_11775 0.50 -0.7
2,600,181 - AO353_11775 0.50 +0.1
2,600,181 - AO353_11775 0.50 -1.0
2,600,181 - AO353_11775 0.50 -1.4

Or see this region's nucleotide sequence