Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00875

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00865 and AO353_00870 overlap by 42 nucleotidesAO353_00870 and AO353_00875 are separated by 14 nucleotidesAO353_00875 and AO353_00880 are separated by 20 nucleotides AO353_00865: AO353_00865 - phosphoenolpyruvate synthase, at 195,134 to 197,509 _00865 AO353_00870: AO353_00870 - hypothetical protein, at 197,468 to 197,671 _00870 AO353_00875: AO353_00875 - transcriptional regulator, at 197,686 to 198,504 _00875 AO353_00880: AO353_00880 - 2-methylcitrate dehydratase, at 198,525 to 200,009 _00880 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 196.719 kb on + strand, within AO353_00865at 196.719 kb on + strand, within AO353_00865at 196.719 kb on + strand, within AO353_00865at 196.800 kb on + strand, within AO353_00865at 196.801 kb on - strand, within AO353_00865at 196.829 kb on + strand, within AO353_00865at 196.830 kb on - strand, within AO353_00865at 196.830 kb on - strand, within AO353_00865at 196.830 kb on - strand, within AO353_00865at 196.864 kb on + strand, within AO353_00865at 196.911 kb on - strand, within AO353_00865at 196.949 kb on + strand, within AO353_00865at 196.949 kb on + strand, within AO353_00865at 196.975 kb on + strand, within AO353_00865at 196.976 kb on - strand, within AO353_00865at 196.976 kb on - strand, within AO353_00865at 196.976 kb on - strand, within AO353_00865at 197.002 kb on - strand, within AO353_00865at 197.036 kb on + strand, within AO353_00865at 197.036 kb on + strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.339 kb on + strandat 197.340 kb on - strandat 197.358 kb on + strandat 197.416 kb on + strandat 197.417 kb on - strandat 197.417 kb on - strandat 197.417 kb on - strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.500 kb on - strandat 197.500 kb on - strandat 197.504 kb on + strandat 197.504 kb on + strandat 197.504 kb on + strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.525 kb on - strand, within AO353_00870at 197.581 kb on + strand, within AO353_00870at 197.582 kb on - strand, within AO353_00870at 197.582 kb on - strand, within AO353_00870at 197.601 kb on + strand, within AO353_00870at 197.602 kb on - strand, within AO353_00870at 197.602 kb on - strand, within AO353_00870at 197.642 kb on + strand, within AO353_00870at 197.642 kb on + strandat 197.643 kb on - strand, within AO353_00870at 197.643 kb on - strand, within AO353_00870at 197.643 kb on - strand, within AO353_00870at 197.648 kb on - strand, within AO353_00870at 197.669 kb on + strandat 197.707 kb on - strandat 197.707 kb on - strandat 197.727 kb on + strandat 197.728 kb on - strandat 197.728 kb on - strandat 197.775 kb on + strand, within AO353_00875at 197.792 kb on + strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.800 kb on + strand, within AO353_00875at 197.800 kb on + strand, within AO353_00875at 197.801 kb on - strand, within AO353_00875at 197.801 kb on - strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.907 kb on + strand, within AO353_00875at 197.908 kb on - strand, within AO353_00875at 197.908 kb on - strand, within AO353_00875at 198.004 kb on + strand, within AO353_00875at 198.005 kb on - strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.109 kb on + strand, within AO353_00875at 198.110 kb on - strand, within AO353_00875at 198.110 kb on - strand, within AO353_00875at 198.112 kb on + strand, within AO353_00875at 198.113 kb on - strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.176 kb on - strand, within AO353_00875at 198.176 kb on - strand, within AO353_00875at 198.358 kb on + strand, within AO353_00875at 198.358 kb on + strand, within AO353_00875at 198.359 kb on - strand, within AO353_00875at 198.502 kb on + strandat 198.502 kb on + strandat 198.793 kb on + strand, within AO353_00880at 198.806 kb on - strand, within AO353_00880at 198.884 kb on - strand, within AO353_00880at 198.884 kb on - strand, within AO353_00880at 198.884 kb on - strand, within AO353_00880at 198.884 kb on - strand, within AO353_00880at 198.931 kb on + strand, within AO353_00880at 198.932 kb on - strand, within AO353_00880at 198.932 kb on - strand, within AO353_00880at 198.932 kb on - strand, within AO353_00880at 198.990 kb on - strand, within AO353_00880at 198.990 kb on - strand, within AO353_00880at 198.990 kb on - strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.153 kb on + strand, within AO353_00880at 199.153 kb on + strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.234 kb on + strand, within AO353_00880at 199.234 kb on + strand, within AO353_00880at 199.235 kb on - strand, within AO353_00880at 199.235 kb on - strandat 199.375 kb on + strand, within AO353_00880at 199.376 kb on - strand, within AO353_00880

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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196,719 + AO353_00865 0.67 -2.9
196,719 + AO353_00865 0.67 -2.0
196,719 + AO353_00865 0.67 -3.0
196,800 + AO353_00865 0.70 +0.4
196,801 - AO353_00865 0.70 -2.3
196,829 + AO353_00865 0.71 -1.8
196,830 - AO353_00865 0.71 -1.4
196,830 - AO353_00865 0.71 -1.0
196,830 - AO353_00865 0.71 -1.4
196,864 + AO353_00865 0.73 -1.2
196,911 - AO353_00865 0.75 -2.1
196,949 + AO353_00865 0.76 -1.8
196,949 + AO353_00865 0.76 -2.1
196,975 + AO353_00865 0.77 -1.7
196,976 - AO353_00865 0.78 -1.0
196,976 - AO353_00865 0.78 -2.2
196,976 - AO353_00865 0.78 -1.8
197,002 - AO353_00865 0.79 -0.6
197,036 + AO353_00865 0.80 -1.2
197,036 + AO353_00865 0.80 -0.4
197,037 - AO353_00865 0.80 -0.8
197,037 - AO353_00865 0.80 -1.4
197,037 - AO353_00865 0.80 -0.6
197,037 - AO353_00865 0.80 -1.0
197,037 - AO353_00865 0.80 -1.4
197,339 + -1.8
197,340 - -1.6
197,358 + +0.8
197,416 + -2.1
197,417 - -2.1
197,417 - -1.7
197,417 - +0.8
197,462 + -1.2
197,462 + -0.2
197,462 + -2.0
197,462 + -0.8
197,462 + -2.3
197,462 + -2.3
197,462 + -1.0
197,462 + -1.9
197,462 + -0.2
197,463 - -1.6
197,463 - +1.4
197,463 - +0.0
197,463 - -2.2
197,463 - -2.1
197,463 - -2.8
197,463 - -1.6
197,463 - -2.3
197,463 - -1.0
197,463 - -0.6
197,463 - -1.0
197,463 - -2.0
197,495 + -1.6
197,495 + -2.1
197,495 + -1.4
197,495 + -2.2
197,495 + -1.4
197,495 + -2.1
197,495 + -1.9
197,495 + -0.6
197,495 + -1.0
197,495 + -0.4
197,495 + -2.4
197,495 + -1.2
197,496 - -1.9
197,496 - -2.1
197,496 - -2.0
197,496 - -2.1
197,496 - -2.1
197,496 - -1.0
197,496 - -1.6
197,496 - -2.6
197,499 + -2.3
197,499 + -1.2
197,499 + -2.4
197,499 + +3.0
197,499 + -1.6
197,499 + -2.1
197,500 - -1.0
197,500 - -0.6
197,504 + -1.2
197,504 + +1.4
197,504 + -3.3
197,505 - -0.2
197,505 - -1.0
197,505 - -0.6
197,505 - -3.3
197,505 - -2.0
197,505 - -1.6
197,525 - AO353_00870 0.28 -0.4
197,581 + AO353_00870 0.55 -1.2
197,582 - AO353_00870 0.56 +1.4
197,582 - AO353_00870 0.56 -0.1
197,601 + AO353_00870 0.65 -2.0
197,602 - AO353_00870 0.66 -0.4
197,602 - AO353_00870 0.66 -1.6
197,642 + AO353_00870 0.85 -2.3
197,642 + -0.2
197,643 - AO353_00870 0.86 -1.4
197,643 - AO353_00870 0.86 -1.0
197,643 - AO353_00870 0.86 -0.0
197,648 - AO353_00870 0.88 +2.2
197,669 + -2.5
197,707 - +0.7
197,707 - -1.0
197,727 + -2.5
197,728 - -0.4
197,728 - +0.8
197,775 + AO353_00875 0.11 -0.8
197,792 + AO353_00875 0.13 +0.8
197,793 - AO353_00875 0.13 -0.2
197,793 - AO353_00875 0.13 +1.0
197,793 - AO353_00875 0.13 -0.4
197,800 + AO353_00875 0.14 -3.5
197,800 + AO353_00875 0.14 -1.6
197,801 - AO353_00875 0.14 +1.2
197,801 - AO353_00875 0.14 -1.1
197,834 + AO353_00875 0.18 -1.0
197,834 + AO353_00875 0.18 -1.2
197,834 + AO353_00875 0.18 -2.0
197,834 + AO353_00875 0.18 -2.2
197,834 + AO353_00875 0.18 -1.0
197,834 + AO353_00875 0.18 -2.6
197,834 + AO353_00875 0.18 +0.2
197,835 - AO353_00875 0.18 -1.2
197,835 - AO353_00875 0.18 -0.2
197,835 - AO353_00875 0.18 -0.3
197,835 - AO353_00875 0.18 -0.2
197,907 + AO353_00875 0.27 -2.1
197,908 - AO353_00875 0.27 +0.0
197,908 - AO353_00875 0.27 -0.5
198,004 + AO353_00875 0.39 -2.0
198,005 - AO353_00875 0.39 -1.3
198,046 + AO353_00875 0.44 -1.3
198,046 + AO353_00875 0.44 -1.5
198,046 + AO353_00875 0.44 -0.2
198,046 + AO353_00875 0.44 -1.2
198,046 + AO353_00875 0.44 -1.2
198,046 + AO353_00875 0.44 -0.4
198,046 + AO353_00875 0.44 -3.2
198,046 + AO353_00875 0.44 -1.0
198,046 + AO353_00875 0.44 +0.0
198,046 + AO353_00875 0.44 -1.8
198,047 - AO353_00875 0.44 -0.7
198,047 - AO353_00875 0.44 -3.0
198,047 - AO353_00875 0.44 -0.2
198,047 - AO353_00875 0.44 -0.2
198,047 - AO353_00875 0.44 +0.0
198,047 - AO353_00875 0.44 -0.6
198,109 + AO353_00875 0.52 -1.3
198,110 - AO353_00875 0.52 -0.5
198,110 - AO353_00875 0.52 +0.7
198,112 + AO353_00875 0.52 -1.6
198,113 - AO353_00875 0.52 -0.6
198,175 + AO353_00875 0.60 -1.4
198,175 + AO353_00875 0.60 +0.4
198,175 + AO353_00875 0.60 -0.4
198,175 + AO353_00875 0.60 +0.4
198,176 - AO353_00875 0.60 -0.4
198,176 - AO353_00875 0.60 +1.1
198,358 + AO353_00875 0.82 +1.4
198,358 + AO353_00875 0.82 -0.7
198,359 - AO353_00875 0.82 -1.5
198,502 + -0.7
198,502 + -2.4
198,793 + AO353_00880 0.18 -0.2
198,806 - AO353_00880 0.19 +1.1
198,884 - AO353_00880 0.24 +0.2
198,884 - AO353_00880 0.24 +0.3
198,884 - AO353_00880 0.24 +0.8
198,884 - AO353_00880 0.24 +1.0
198,931 + AO353_00880 0.27 -0.6
198,932 - AO353_00880 0.27 -0.4
198,932 - AO353_00880 0.27 +2.7
198,932 - AO353_00880 0.27 -0.2
198,990 - AO353_00880 0.31 +1.0
198,990 - AO353_00880 0.31 +1.1
198,990 - AO353_00880 0.31 +0.4
199,144 + AO353_00880 0.42 +0.5
199,144 + AO353_00880 0.42 +0.1
199,144 + AO353_00880 0.42 +1.6
199,144 + AO353_00880 0.42 -0.1
199,144 + AO353_00880 0.42 +0.6
199,144 + AO353_00880 0.42 +0.4
199,144 + AO353_00880 0.42 -0.2
199,145 - AO353_00880 0.42 -0.1
199,145 - AO353_00880 0.42 +0.1
199,145 - AO353_00880 0.42 -0.0
199,145 - AO353_00880 0.42 +0.7
199,145 - AO353_00880 0.42 +1.4
199,145 - AO353_00880 0.42 -1.6
199,145 - AO353_00880 0.42 -1.3
199,153 + AO353_00880 0.42 -1.0
199,153 + AO353_00880 0.42 -1.3
199,176 - AO353_00880 0.44 -1.4
199,176 - AO353_00880 0.44 -1.3
199,176 - AO353_00880 0.44 +0.1
199,176 - AO353_00880 0.44 +0.9
199,176 - AO353_00880 0.44 -0.2
199,234 + AO353_00880 0.48 +0.1
199,234 + AO353_00880 0.48 -0.6
199,235 - AO353_00880 0.48 -1.7
199,235 - +1.4
199,375 + AO353_00880 0.57 +0.4
199,376 - AO353_00880 0.57 -1.6

Or see this region's nucleotide sequence