Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004468 and ABIE53_004469 overlap by 1 nucleotides ABIE53_004469 and ABIE53_004470 are separated by 42 nucleotides ABIE53_004470 and ABIE53_004471 are separated by 37 nucleotides
ABIE53_004468: ABIE53_004468 - transcriptional regulator with GAF, ATPase, and Fis domain, at 657,563 to 658,921
_004468
ABIE53_004469: ABIE53_004469 - subfamily B ATP-binding cassette protein HlyB/CyaB, at 658,921 to 661,977
_004469
ABIE53_004470: ABIE53_004470 - parvulin-like peptidyl-prolyl isomerase, at 662,020 to 662,772
_004470
ABIE53_004471: ABIE53_004471 - hemolysin D, at 662,810 to 664,183
_004471
Position (kb) 658
659
660
661
662 Strain fitness (log2 ratio) -2
-1
0
1
2 at 657.993 kb on + strand, within ABIE53_004468 at 657.994 kb on - strand, within ABIE53_004468 at 657.994 kb on - strand, within ABIE53_004468 at 657.994 kb on - strand, within ABIE53_004468 at 657.994 kb on - strand, within ABIE53_004468 at 658.149 kb on + strand, within ABIE53_004468 at 658.340 kb on - strand, within ABIE53_004468 at 658.433 kb on + strand, within ABIE53_004468 at 658.434 kb on - strand, within ABIE53_004468 at 658.468 kb on + strand, within ABIE53_004468 at 658.477 kb on + strand, within ABIE53_004468 at 658.746 kb on - strand, within ABIE53_004468 at 658.911 kb on - strand at 658.911 kb on - strand at 658.911 kb on - strand at 658.955 kb on + strand at 658.956 kb on - strand at 659.049 kb on + strand at 659.050 kb on - strand at 659.103 kb on + strand at 659.104 kb on - strand at 659.212 kb on + strand at 659.212 kb on + strand at 659.406 kb on - strand, within ABIE53_004469 at 659.597 kb on + strand, within ABIE53_004469 at 659.598 kb on - strand, within ABIE53_004469 at 659.771 kb on - strand, within ABIE53_004469 at 659.798 kb on - strand, within ABIE53_004469 at 659.937 kb on + strand, within ABIE53_004469 at 660.150 kb on + strand, within ABIE53_004469 at 660.151 kb on - strand, within ABIE53_004469 at 660.151 kb on - strand, within ABIE53_004469 at 660.194 kb on + strand, within ABIE53_004469 at 660.215 kb on + strand, within ABIE53_004469 at 660.215 kb on + strand, within ABIE53_004469 at 660.394 kb on - strand, within ABIE53_004469 at 660.394 kb on - strand, within ABIE53_004469 at 660.394 kb on - strand, within ABIE53_004469 at 660.637 kb on + strand, within ABIE53_004469 at 660.638 kb on - strand, within ABIE53_004469 at 660.638 kb on - strand, within ABIE53_004469 at 660.772 kb on + strand, within ABIE53_004469 at 660.773 kb on - strand, within ABIE53_004469 at 660.776 kb on + strand, within ABIE53_004469 at 660.776 kb on + strand, within ABIE53_004469 at 660.777 kb on - strand, within ABIE53_004469 at 660.794 kb on + strand, within ABIE53_004469 at 660.806 kb on + strand, within ABIE53_004469 at 660.807 kb on - strand, within ABIE53_004469 at 660.807 kb on - strand, within ABIE53_004469 at 660.992 kb on + strand, within ABIE53_004469 at 660.992 kb on + strand, within ABIE53_004469 at 661.072 kb on + strand, within ABIE53_004469 at 661.073 kb on - strand, within ABIE53_004469 at 661.073 kb on - strand, within ABIE53_004469 at 661.114 kb on - strand, within ABIE53_004469 at 661.114 kb on - strand, within ABIE53_004469 at 661.193 kb on - strand, within ABIE53_004469 at 661.223 kb on - strand, within ABIE53_004469 at 661.328 kb on - strand, within ABIE53_004469 at 661.358 kb on + strand, within ABIE53_004469 at 661.391 kb on - strand, within ABIE53_004469 at 661.412 kb on + strand, within ABIE53_004469 at 661.413 kb on - strand, within ABIE53_004469 at 661.486 kb on - strand, within ABIE53_004469 at 661.493 kb on + strand, within ABIE53_004469 at 661.494 kb on - strand, within ABIE53_004469 at 661.494 kb on - strand, within ABIE53_004469 at 661.578 kb on - strand, within ABIE53_004469 at 661.694 kb on + strand at 661.694 kb on + strand at 661.694 kb on + strand at 661.694 kb on + strand at 661.695 kb on - strand at 661.695 kb on - strand at 661.695 kb on - strand at 661.695 kb on - strand at 661.805 kb on - strand at 661.806 kb on + strand at 661.806 kb on + strand at 661.807 kb on - strand at 661.807 kb on - strand at 661.809 kb on - strand at 661.809 kb on - strand at 661.859 kb on + strand at 661.859 kb on + strand at 661.877 kb on + strand at 661.922 kb on - strand at 661.922 kb on - strand at 661.922 kb on - strand at 661.922 kb on - strand at 661.977 kb on + strand at 662.248 kb on + strand, within ABIE53_004470 at 662.249 kb on - strand, within ABIE53_004470 at 662.320 kb on - strand, within ABIE53_004470 at 662.383 kb on - strand, within ABIE53_004470 at 662.429 kb on + strand, within ABIE53_004470 at 662.481 kb on - strand, within ABIE53_004470 at 662.671 kb on + strand, within ABIE53_004470 at 662.671 kb on + strand, within ABIE53_004470 at 662.680 kb on + strand, within ABIE53_004470 at 662.761 kb on + strand at 662.762 kb on - strand at 662.910 kb on + strand at 662.910 kb on + strand at 662.964 kb on + strand, within ABIE53_004471
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 657,993 + ABIE53_004468 0.32 -1.0 657,994 - ABIE53_004468 0.32 -0.7 657,994 - ABIE53_004468 0.32 +0.1 657,994 - ABIE53_004468 0.32 -0.9 657,994 - ABIE53_004468 0.32 -1.8 658,149 + ABIE53_004468 0.43 -0.4 658,340 - ABIE53_004468 0.57 -0.2 658,433 + ABIE53_004468 0.64 -0.1 658,434 - ABIE53_004468 0.64 -1.0 658,468 + ABIE53_004468 0.67 -2.3 658,477 + ABIE53_004468 0.67 -2.3 658,746 - ABIE53_004468 0.87 +0.5 658,911 - +0.2 658,911 - -2.4 658,911 - +2.6 658,955 + +0.7 658,956 - -0.5 659,049 + +1.0 659,050 - -1.0 659,103 + +0.1 659,104 - -0.8 659,212 + +0.5 659,212 + -0.9 659,406 - ABIE53_004469 0.16 +0.1 659,597 + ABIE53_004469 0.22 -0.7 659,598 - ABIE53_004469 0.22 +0.1 659,771 - ABIE53_004469 0.28 -1.2 659,798 - ABIE53_004469 0.29 -1.0 659,937 + ABIE53_004469 0.33 -0.4 660,150 + ABIE53_004469 0.40 +0.8 660,151 - ABIE53_004469 0.40 -0.8 660,151 - ABIE53_004469 0.40 -0.4 660,194 + ABIE53_004469 0.42 +1.2 660,215 + ABIE53_004469 0.42 +1.4 660,215 + ABIE53_004469 0.42 -0.1 660,394 - ABIE53_004469 0.48 +0.4 660,394 - ABIE53_004469 0.48 -0.4 660,394 - ABIE53_004469 0.48 -0.4 660,637 + ABIE53_004469 0.56 -1.8 660,638 - ABIE53_004469 0.56 -0.2 660,638 - ABIE53_004469 0.56 +1.9 660,772 + ABIE53_004469 0.61 +2.5 660,773 - ABIE53_004469 0.61 -0.1 660,776 + ABIE53_004469 0.61 +2.5 660,776 + ABIE53_004469 0.61 -1.9 660,777 - ABIE53_004469 0.61 +0.4 660,794 + ABIE53_004469 0.61 -0.5 660,806 + ABIE53_004469 0.62 -0.1 660,807 - ABIE53_004469 0.62 +1.9 660,807 - ABIE53_004469 0.62 -0.5 660,992 + ABIE53_004469 0.68 -0.6 660,992 + ABIE53_004469 0.68 -0.2 661,072 + ABIE53_004469 0.70 -1.4 661,073 - ABIE53_004469 0.70 +0.1 661,073 - ABIE53_004469 0.70 +0.9 661,114 - ABIE53_004469 0.72 -0.2 661,114 - ABIE53_004469 0.72 -0.6 661,193 - ABIE53_004469 0.74 -0.3 661,223 - ABIE53_004469 0.75 -0.2 661,328 - ABIE53_004469 0.79 +2.5 661,358 + ABIE53_004469 0.80 -0.6 661,391 - ABIE53_004469 0.81 -0.2 661,412 + ABIE53_004469 0.81 -0.4 661,413 - ABIE53_004469 0.82 -1.3 661,486 - ABIE53_004469 0.84 -0.6 661,493 + ABIE53_004469 0.84 -2.1 661,494 - ABIE53_004469 0.84 +0.5 661,494 - ABIE53_004469 0.84 -0.5 661,578 - ABIE53_004469 0.87 +1.2 661,694 + -1.1 661,694 + +0.3 661,694 + -0.7 661,694 + -0.7 661,695 - -0.5 661,695 - -2.0 661,695 - -0.8 661,695 - -2.1 661,805 - -2.5 661,806 + +0.1 661,806 + -1.0 661,807 - -1.2 661,807 - -0.3 661,809 - -0.4 661,809 - -0.3 661,859 + -1.0 661,859 + +0.7 661,877 + -1.5 661,922 - +0.4 661,922 - +1.5 661,922 - -0.6 661,922 - -0.2 661,977 + +0.4 662,248 + ABIE53_004470 0.30 -0.2 662,249 - ABIE53_004470 0.30 -1.1 662,320 - ABIE53_004470 0.40 +0.7 662,383 - ABIE53_004470 0.48 -1.4 662,429 + ABIE53_004470 0.54 -1.3 662,481 - ABIE53_004470 0.61 +0.2 662,671 + ABIE53_004470 0.86 -0.3 662,671 + ABIE53_004470 0.86 +0.4 662,680 + ABIE53_004470 0.88 -1.2 662,761 + +1.9 662,762 - -0.3 662,910 + +0.4 662,910 + +1.1 662,964 + ABIE53_004471 0.11 -0.2
Or see this region's nucleotide sequence