Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004339

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004338 and ABIE53_004339 are separated by 33 nucleotidesABIE53_004339 and ABIE53_004340 are separated by 137 nucleotides ABIE53_004338: ABIE53_004338 - putative MFS family arabinose efflux permease, at 514,058 to 515,311 _004338 ABIE53_004339: ABIE53_004339 - pimeloyl-ACP methyl ester carboxylesterase, at 515,345 to 516,223 _004339 ABIE53_004340: ABIE53_004340 - DNA-binding MurR/RpiR family transcriptional regulator, at 516,361 to 517,239 _004340 Position (kb) 515 516 517Strain fitness (log2 ratio) -2 -1 0 1 2at 514.568 kb on + strand, within ABIE53_004338at 514.569 kb on - strand, within ABIE53_004338at 514.569 kb on - strand, within ABIE53_004338at 514.569 kb on - strand, within ABIE53_004338at 514.571 kb on + strand, within ABIE53_004338at 514.626 kb on + strand, within ABIE53_004338at 514.627 kb on - strand, within ABIE53_004338at 514.627 kb on - strand, within ABIE53_004338at 514.658 kb on + strand, within ABIE53_004338at 514.658 kb on + strand, within ABIE53_004338at 514.659 kb on - strand, within ABIE53_004338at 514.728 kb on - strand, within ABIE53_004338at 514.935 kb on + strand, within ABIE53_004338at 514.936 kb on - strand, within ABIE53_004338at 514.936 kb on - strand, within ABIE53_004338at 515.235 kb on + strandat 515.235 kb on + strandat 515.235 kb on + strandat 515.235 kb on + strandat 515.235 kb on + strandat 515.235 kb on + strandat 515.236 kb on - strandat 515.236 kb on - strandat 515.236 kb on - strandat 515.290 kb on + strandat 515.290 kb on + strandat 515.290 kb on + strandat 515.362 kb on + strandat 515.362 kb on + strandat 515.362 kb on + strandat 515.362 kb on + strandat 515.445 kb on + strand, within ABIE53_004339at 515.445 kb on + strand, within ABIE53_004339at 515.445 kb on + strand, within ABIE53_004339at 515.445 kb on + strand, within ABIE53_004339at 515.445 kb on + strand, within ABIE53_004339at 515.445 kb on + strand, within ABIE53_004339at 515.446 kb on - strand, within ABIE53_004339at 515.446 kb on - strand, within ABIE53_004339at 515.446 kb on - strand, within ABIE53_004339at 515.480 kb on + strand, within ABIE53_004339at 515.480 kb on + strand, within ABIE53_004339at 515.481 kb on - strand, within ABIE53_004339at 515.481 kb on - strand, within ABIE53_004339at 515.481 kb on - strand, within ABIE53_004339at 515.481 kb on - strand, within ABIE53_004339at 515.491 kb on + strand, within ABIE53_004339at 515.492 kb on - strand, within ABIE53_004339at 515.534 kb on + strand, within ABIE53_004339at 515.552 kb on - strand, within ABIE53_004339at 515.576 kb on + strand, within ABIE53_004339at 515.582 kb on + strand, within ABIE53_004339at 515.584 kb on + strand, within ABIE53_004339at 515.584 kb on + strand, within ABIE53_004339at 515.584 kb on + strand, within ABIE53_004339at 515.585 kb on - strand, within ABIE53_004339at 515.585 kb on - strand, within ABIE53_004339at 515.585 kb on - strand, within ABIE53_004339at 515.585 kb on - strand, within ABIE53_004339at 515.645 kb on + strand, within ABIE53_004339at 515.646 kb on - strand, within ABIE53_004339at 515.666 kb on + strand, within ABIE53_004339at 515.667 kb on - strand, within ABIE53_004339at 515.972 kb on + strand, within ABIE53_004339at 515.973 kb on - strand, within ABIE53_004339at 515.973 kb on - strand, within ABIE53_004339at 515.973 kb on - strand, within ABIE53_004339at 515.973 kb on - strand, within ABIE53_004339at 515.973 kb on - strand, within ABIE53_004339at 516.062 kb on + strand, within ABIE53_004339at 516.062 kb on + strand, within ABIE53_004339at 516.062 kb on + strand, within ABIE53_004339at 516.062 kb on + strand, within ABIE53_004339at 516.062 kb on + strand, within ABIE53_004339at 516.062 kb on + strand, within ABIE53_004339at 516.063 kb on - strand, within ABIE53_004339at 516.063 kb on - strand, within ABIE53_004339at 516.063 kb on - strand, within ABIE53_004339at 516.098 kb on + strand, within ABIE53_004339at 516.230 kb on - strandat 516.230 kb on - strandat 516.230 kb on - strandat 516.284 kb on + strandat 516.284 kb on + strandat 516.296 kb on + strandat 516.296 kb on + strandat 516.296 kb on + strandat 516.312 kb on + strandat 516.312 kb on + strandat 516.312 kb on + strandat 516.312 kb on + strandat 516.313 kb on - strandat 516.316 kb on + strandat 516.317 kb on - strandat 516.317 kb on - strandat 516.317 kb on - strandat 516.341 kb on + strandat 516.342 kb on - strandat 516.342 kb on - strandat 516.342 kb on - strandat 516.342 kb on - strandat 516.345 kb on + strandat 516.436 kb on + strandat 516.436 kb on + strandat 516.436 kb on + strandat 516.437 kb on - strandat 516.437 kb on - strandat 516.437 kb on - strandat 516.438 kb on + strandat 516.438 kb on + strandat 516.438 kb on + strandat 516.439 kb on - strandat 516.439 kb on - strandat 516.439 kb on - strandat 516.439 kb on - strandat 516.439 kb on - strandat 516.722 kb on - strand, within ABIE53_004340at 516.722 kb on - strand, within ABIE53_004340at 516.728 kb on - strand, within ABIE53_004340at 516.793 kb on + strand, within ABIE53_004340at 516.793 kb on + strand, within ABIE53_004340at 516.794 kb on - strand, within ABIE53_004340at 516.795 kb on + strand, within ABIE53_004340at 516.795 kb on + strand, within ABIE53_004340at 516.844 kb on + strand, within ABIE53_004340at 516.845 kb on - strand, within ABIE53_004340at 516.845 kb on - strand, within ABIE53_004340at 516.874 kb on + strand, within ABIE53_004340at 516.874 kb on + strand, within ABIE53_004340at 516.875 kb on - strand, within ABIE53_004340at 516.898 kb on + strand, within ABIE53_004340at 516.898 kb on + strand, within ABIE53_004340at 516.899 kb on - strand, within ABIE53_004340at 516.899 kb on - strand, within ABIE53_004340at 516.899 kb on - strand, within ABIE53_004340at 516.899 kb on - strand, within ABIE53_004340at 516.899 kb on - strand, within ABIE53_004340at 516.962 kb on - strand, within ABIE53_004340

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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514,568 + ABIE53_004338 0.41 +1.2
514,569 - ABIE53_004338 0.41 -1.0
514,569 - ABIE53_004338 0.41 -0.5
514,569 - ABIE53_004338 0.41 +0.2
514,571 + ABIE53_004338 0.41 -0.6
514,626 + ABIE53_004338 0.45 -0.7
514,627 - ABIE53_004338 0.45 -0.7
514,627 - ABIE53_004338 0.45 +0.1
514,658 + ABIE53_004338 0.48 -2.4
514,658 + ABIE53_004338 0.48 +1.5
514,659 - ABIE53_004338 0.48 +0.5
514,728 - ABIE53_004338 0.53 -0.6
514,935 + ABIE53_004338 0.70 -0.8
514,936 - ABIE53_004338 0.70 -0.6
514,936 - ABIE53_004338 0.70 +1.0
515,235 + -0.3
515,235 + +1.0
515,235 + -0.3
515,235 + +0.5
515,235 + +0.4
515,235 + +1.0
515,236 - +1.2
515,236 - -1.1
515,236 - +0.7
515,290 + +0.5
515,290 + -0.4
515,290 + +0.1
515,362 + +0.5
515,362 + -1.4
515,362 + -0.4
515,362 + +1.8
515,445 + ABIE53_004339 0.11 +0.7
515,445 + ABIE53_004339 0.11 -0.5
515,445 + ABIE53_004339 0.11 -0.3
515,445 + ABIE53_004339 0.11 +0.2
515,445 + ABIE53_004339 0.11 -1.3
515,445 + ABIE53_004339 0.11 -1.9
515,446 - ABIE53_004339 0.11 +0.4
515,446 - ABIE53_004339 0.11 -0.8
515,446 - ABIE53_004339 0.11 +2.1
515,480 + ABIE53_004339 0.15 -2.1
515,480 + ABIE53_004339 0.15 -1.1
515,481 - ABIE53_004339 0.15 +0.5
515,481 - ABIE53_004339 0.15 -1.3
515,481 - ABIE53_004339 0.15 -0.9
515,481 - ABIE53_004339 0.15 -1.3
515,491 + ABIE53_004339 0.17 +0.3
515,492 - ABIE53_004339 0.17 -1.0
515,534 + ABIE53_004339 0.22 +0.4
515,552 - ABIE53_004339 0.24 -0.3
515,576 + ABIE53_004339 0.26 +0.1
515,582 + ABIE53_004339 0.27 +0.5
515,584 + ABIE53_004339 0.27 +0.6
515,584 + ABIE53_004339 0.27 +0.8
515,584 + ABIE53_004339 0.27 +2.2
515,585 - ABIE53_004339 0.27 +2.0
515,585 - ABIE53_004339 0.27 +0.3
515,585 - ABIE53_004339 0.27 +2.3
515,585 - ABIE53_004339 0.27 -1.0
515,645 + ABIE53_004339 0.34 -0.5
515,646 - ABIE53_004339 0.34 +0.4
515,666 + ABIE53_004339 0.37 +1.5
515,667 - ABIE53_004339 0.37 -2.4
515,972 + ABIE53_004339 0.71 +0.5
515,973 - ABIE53_004339 0.71 +1.7
515,973 - ABIE53_004339 0.71 -1.3
515,973 - ABIE53_004339 0.71 -0.1
515,973 - ABIE53_004339 0.71 +1.2
515,973 - ABIE53_004339 0.71 +2.0
516,062 + ABIE53_004339 0.82 -1.4
516,062 + ABIE53_004339 0.82 +0.2
516,062 + ABIE53_004339 0.82 +0.7
516,062 + ABIE53_004339 0.82 +1.2
516,062 + ABIE53_004339 0.82 -0.5
516,062 + ABIE53_004339 0.82 +0.7
516,063 - ABIE53_004339 0.82 -1.8
516,063 - ABIE53_004339 0.82 -0.8
516,063 - ABIE53_004339 0.82 -0.4
516,098 + ABIE53_004339 0.86 +1.2
516,230 - +0.5
516,230 - -0.5
516,230 - -0.5
516,284 + +1.5
516,284 + -1.0
516,296 + +0.3
516,296 + -0.2
516,296 + +1.5
516,312 + -1.1
516,312 + -0.3
516,312 + -0.7
516,312 + -0.4
516,313 - +2.5
516,316 + -0.4
516,317 - +0.1
516,317 - -1.1
516,317 - +1.5
516,341 + -1.1
516,342 - +0.4
516,342 - -0.3
516,342 - +0.5
516,342 - +0.1
516,345 + -1.3
516,436 + -2.6
516,436 + -0.7
516,436 + -0.6
516,437 - +0.5
516,437 - +0.2
516,437 - +1.4
516,438 + -0.4
516,438 + +0.4
516,438 + -0.6
516,439 - +1.0
516,439 - +0.4
516,439 - -1.5
516,439 - -0.3
516,439 - -0.8
516,722 - ABIE53_004340 0.41 +1.5
516,722 - ABIE53_004340 0.41 -0.4
516,728 - ABIE53_004340 0.42 +1.4
516,793 + ABIE53_004340 0.49 -0.9
516,793 + ABIE53_004340 0.49 +1.1
516,794 - ABIE53_004340 0.49 -1.8
516,795 + ABIE53_004340 0.49 +0.4
516,795 + ABIE53_004340 0.49 +1.5
516,844 + ABIE53_004340 0.55 -0.6
516,845 - ABIE53_004340 0.55 -0.3
516,845 - ABIE53_004340 0.55 -1.3
516,874 + ABIE53_004340 0.58 +2.1
516,874 + ABIE53_004340 0.58 +0.4
516,875 - ABIE53_004340 0.58 -0.2
516,898 + ABIE53_004340 0.61 -0.6
516,898 + ABIE53_004340 0.61 -0.5
516,899 - ABIE53_004340 0.61 +1.2
516,899 - ABIE53_004340 0.61 +0.7
516,899 - ABIE53_004340 0.61 -0.4
516,899 - ABIE53_004340 0.61 +2.0
516,899 - ABIE53_004340 0.61 -0.7
516,962 - ABIE53_004340 0.68 +1.5

Or see this region's nucleotide sequence