Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003742 and ABIE53_003743 overlap by 1 nucleotides ABIE53_003743 and ABIE53_003744 overlap by 4 nucleotides ABIE53_003744 and ABIE53_003745 overlap by 4 nucleotides
ABIE53_003742: ABIE53_003742 - type IV pilus assembly protein PilQ, at 4,193,881 to 4,195,626
_003742
ABIE53_003743: ABIE53_003743 - Tfp pilus assembly protein PilO, at 4,195,626 to 4,196,561
_003743
ABIE53_003744: ABIE53_003744 - Tfp pilus assembly protein PilN, at 4,196,558 to 4,197,298
_003744
ABIE53_003745: ABIE53_003745 - Tfp pilus assembly PilM family ATPase, at 4,197,295 to 4,198,287
_003745
Position (kb) 4196
4197
4198 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4195.683 kb on - strand at 4195.760 kb on + strand, within ABIE53_003743 at 4195.873 kb on + strand, within ABIE53_003743 at 4195.966 kb on + strand, within ABIE53_003743 at 4195.966 kb on + strand, within ABIE53_003743 at 4196.084 kb on + strand, within ABIE53_003743 at 4196.085 kb on - strand, within ABIE53_003743 at 4196.085 kb on - strand, within ABIE53_003743 at 4196.094 kb on - strand, within ABIE53_003743 at 4196.471 kb on + strand at 4196.471 kb on + strand at 4196.471 kb on + strand at 4196.471 kb on + strand at 4196.471 kb on + strand at 4196.471 kb on + strand at 4196.472 kb on - strand at 4196.472 kb on - strand at 4196.472 kb on - strand at 4196.472 kb on - strand at 4196.544 kb on + strand at 4196.544 kb on + strand at 4196.544 kb on + strand at 4196.544 kb on + strand at 4196.545 kb on - strand at 4196.546 kb on + strand at 4196.546 kb on + strand at 4196.546 kb on + strand at 4196.547 kb on - strand at 4196.547 kb on - strand at 4196.555 kb on + strand at 4196.556 kb on - strand at 4196.556 kb on - strand at 4196.556 kb on - strand at 4196.633 kb on + strand, within ABIE53_003744 at 4196.904 kb on + strand, within ABIE53_003744 at 4196.904 kb on + strand, within ABIE53_003744 at 4196.905 kb on - strand, within ABIE53_003744 at 4196.905 kb on - strand, within ABIE53_003744 at 4196.980 kb on + strand, within ABIE53_003744 at 4196.980 kb on + strand, within ABIE53_003744 at 4196.980 kb on + strand, within ABIE53_003744 at 4196.980 kb on + strand, within ABIE53_003744 at 4196.980 kb on + strand, within ABIE53_003744 at 4196.980 kb on + strand, within ABIE53_003744 at 4196.980 kb on + strand, within ABIE53_003744 at 4196.980 kb on + strand, within ABIE53_003744 at 4196.981 kb on - strand, within ABIE53_003744 at 4197.122 kb on + strand, within ABIE53_003744 at 4197.122 kb on + strand, within ABIE53_003744 at 4197.122 kb on + strand, within ABIE53_003744 at 4197.123 kb on - strand, within ABIE53_003744 at 4197.123 kb on - strand, within ABIE53_003744 at 4197.123 kb on - strand, within ABIE53_003744 at 4197.123 kb on - strand, within ABIE53_003744 at 4197.123 kb on - strand, within ABIE53_003744 at 4197.123 kb on - strand, within ABIE53_003744 at 4197.566 kb on + strand, within ABIE53_003745 at 4197.566 kb on + strand, within ABIE53_003745 at 4197.566 kb on + strand, within ABIE53_003745 at 4197.644 kb on + strand, within ABIE53_003745 at 4197.644 kb on + strand, within ABIE53_003745 at 4197.644 kb on + strand, within ABIE53_003745 at 4197.644 kb on + strand, within ABIE53_003745 at 4197.644 kb on + strand, within ABIE53_003745 at 4197.644 kb on + strand, within ABIE53_003745 at 4197.644 kb on + strand, within ABIE53_003745 at 4197.644 kb on + strand, within ABIE53_003745 at 4197.644 kb on + strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.645 kb on - strand, within ABIE53_003745 at 4197.681 kb on - strand, within ABIE53_003745 at 4197.719 kb on - strand, within ABIE53_003745 at 4197.719 kb on - strand, within ABIE53_003745 at 4197.771 kb on + strand, within ABIE53_003745 at 4197.920 kb on + strand, within ABIE53_003745 at 4198.145 kb on + strand, within ABIE53_003745 at 4198.145 kb on + strand, within ABIE53_003745 at 4198.145 kb on + strand, within ABIE53_003745 at 4198.145 kb on + strand, within ABIE53_003745 at 4198.146 kb on - strand, within ABIE53_003745 at 4198.146 kb on - strand, within ABIE53_003745 at 4198.146 kb on - strand, within ABIE53_003745 at 4198.146 kb on - strand, within ABIE53_003745 at 4198.146 kb on - strand, within ABIE53_003745 at 4198.146 kb on - strand, within ABIE53_003745 at 4198.246 kb on - strand at 4198.279 kb on + strand at 4198.279 kb on + strand at 4198.279 kb on + strand at 4198.279 kb on + strand at 4198.279 kb on + strand at 4198.279 kb on + strand at 4198.279 kb on + strand at 4198.280 kb on - strand at 4198.280 kb on - strand at 4198.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,195,683 - -1.6 4,195,760 + ABIE53_003743 0.14 +0.5 4,195,873 + ABIE53_003743 0.26 +1.2 4,195,966 + ABIE53_003743 0.36 -1.4 4,195,966 + ABIE53_003743 0.36 -0.5 4,196,084 + ABIE53_003743 0.49 -0.7 4,196,085 - ABIE53_003743 0.49 -0.9 4,196,085 - ABIE53_003743 0.49 -0.5 4,196,094 - ABIE53_003743 0.50 +0.7 4,196,471 + -0.8 4,196,471 + -1.8 4,196,471 + +3.5 4,196,471 + +0.2 4,196,471 + +1.0 4,196,471 + -0.9 4,196,472 - +0.0 4,196,472 - -2.1 4,196,472 - +0.3 4,196,472 - +1.2 4,196,544 + -1.0 4,196,544 + +0.7 4,196,544 + -1.5 4,196,544 + +0.0 4,196,545 - +1.6 4,196,546 + +0.1 4,196,546 + +0.7 4,196,546 + -0.3 4,196,547 - +0.3 4,196,547 - -0.6 4,196,555 + -1.6 4,196,556 - +0.9 4,196,556 - -0.4 4,196,556 - +0.0 4,196,633 + ABIE53_003744 0.10 -1.1 4,196,904 + ABIE53_003744 0.47 -0.8 4,196,904 + ABIE53_003744 0.47 -0.2 4,196,905 - ABIE53_003744 0.47 +0.0 4,196,905 - ABIE53_003744 0.47 -0.9 4,196,980 + ABIE53_003744 0.57 -1.7 4,196,980 + ABIE53_003744 0.57 +0.0 4,196,980 + ABIE53_003744 0.57 -0.9 4,196,980 + ABIE53_003744 0.57 +1.2 4,196,980 + ABIE53_003744 0.57 -1.2 4,196,980 + ABIE53_003744 0.57 -1.8 4,196,980 + ABIE53_003744 0.57 +0.4 4,196,980 + ABIE53_003744 0.57 -0.2 4,196,981 - ABIE53_003744 0.57 -0.0 4,197,122 + ABIE53_003744 0.76 +1.1 4,197,122 + ABIE53_003744 0.76 -1.6 4,197,122 + ABIE53_003744 0.76 -0.5 4,197,123 - ABIE53_003744 0.76 +0.2 4,197,123 - ABIE53_003744 0.76 -0.7 4,197,123 - ABIE53_003744 0.76 +0.5 4,197,123 - ABIE53_003744 0.76 +0.3 4,197,123 - ABIE53_003744 0.76 -0.5 4,197,123 - ABIE53_003744 0.76 +0.5 4,197,566 + ABIE53_003745 0.27 -1.4 4,197,566 + ABIE53_003745 0.27 -1.7 4,197,566 + ABIE53_003745 0.27 +0.2 4,197,644 + ABIE53_003745 0.35 -1.2 4,197,644 + ABIE53_003745 0.35 -0.7 4,197,644 + ABIE53_003745 0.35 -1.2 4,197,644 + ABIE53_003745 0.35 +1.3 4,197,644 + ABIE53_003745 0.35 +0.5 4,197,644 + ABIE53_003745 0.35 +1.2 4,197,644 + ABIE53_003745 0.35 -0.2 4,197,644 + ABIE53_003745 0.35 -0.2 4,197,644 + ABIE53_003745 0.35 -0.3 4,197,645 - ABIE53_003745 0.35 -0.4 4,197,645 - ABIE53_003745 0.35 -1.2 4,197,645 - ABIE53_003745 0.35 -1.0 4,197,645 - ABIE53_003745 0.35 -0.8 4,197,645 - ABIE53_003745 0.35 -1.2 4,197,645 - ABIE53_003745 0.35 -0.7 4,197,645 - ABIE53_003745 0.35 -1.1 4,197,645 - ABIE53_003745 0.35 -1.3 4,197,645 - ABIE53_003745 0.35 -0.7 4,197,645 - ABIE53_003745 0.35 -1.6 4,197,645 - ABIE53_003745 0.35 +0.7 4,197,645 - ABIE53_003745 0.35 -1.5 4,197,645 - ABIE53_003745 0.35 +1.5 4,197,645 - ABIE53_003745 0.35 +0.4 4,197,645 - ABIE53_003745 0.35 +2.5 4,197,645 - ABIE53_003745 0.35 +0.3 4,197,645 - ABIE53_003745 0.35 -1.1 4,197,645 - ABIE53_003745 0.35 -1.3 4,197,645 - ABIE53_003745 0.35 -0.4 4,197,645 - ABIE53_003745 0.35 -1.2 4,197,645 - ABIE53_003745 0.35 -1.9 4,197,645 - ABIE53_003745 0.35 +0.9 4,197,645 - ABIE53_003745 0.35 -1.6 4,197,681 - ABIE53_003745 0.39 +0.3 4,197,719 - ABIE53_003745 0.43 +0.2 4,197,719 - ABIE53_003745 0.43 +0.7 4,197,771 + ABIE53_003745 0.48 +0.3 4,197,920 + ABIE53_003745 0.63 -1.4 4,198,145 + ABIE53_003745 0.86 +1.6 4,198,145 + ABIE53_003745 0.86 -0.4 4,198,145 + ABIE53_003745 0.86 -1.5 4,198,145 + ABIE53_003745 0.86 -1.6 4,198,146 - ABIE53_003745 0.86 -0.7 4,198,146 - ABIE53_003745 0.86 +0.5 4,198,146 - ABIE53_003745 0.86 +0.9 4,198,146 - ABIE53_003745 0.86 +0.4 4,198,146 - ABIE53_003745 0.86 -1.5 4,198,146 - ABIE53_003745 0.86 -1.5 4,198,246 - -1.0 4,198,279 + -1.9 4,198,279 + -2.4 4,198,279 + -0.2 4,198,279 + +0.2 4,198,279 + +0.2 4,198,279 + +1.2 4,198,279 + +0.5 4,198,280 - -0.9 4,198,280 - -1.0 4,198,280 - -1.8
Or see this region's nucleotide sequence