Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3010

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3009 and DvMF_3010 are separated by 368 nucleotidesDvMF_3010 and DvMF_3011 are separated by 607 nucleotides DvMF_3009: DvMF_3009 - oxidoreductase FAD/NAD(P)-binding domain protein (RefSeq), at 3,795,729 to 3,796,493 _3009 DvMF_3010: DvMF_3010 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,796,862 to 3,798,667 _3010 DvMF_3011: DvMF_3011 - metal dependent phosphohydrolase (RefSeq), at 3,799,275 to 3,800,411 _3011 Position (kb) 3796 3797 3798 3799Strain fitness (log2 ratio) -2 -1 0 1at 3795.925 kb on + strand, within DvMF_3009at 3796.560 kb on - strandat 3796.630 kb on + strandat 3797.297 kb on - strand, within DvMF_3010at 3797.938 kb on - strand, within DvMF_3010at 3798.093 kb on - strand, within DvMF_3010at 3798.138 kb on + strand, within DvMF_3010at 3798.227 kb on - strand, within DvMF_3010at 3798.384 kb on - strand, within DvMF_3010at 3798.490 kb on - strandat 3798.654 kb on + strandat 3798.823 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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3,795,925 + DvMF_3009 0.26 -0.5
3,796,560 - -0.4
3,796,630 + +0.4
3,797,297 - DvMF_3010 0.24 -1.9
3,797,938 - DvMF_3010 0.60 -1.6
3,798,093 - DvMF_3010 0.68 -1.6
3,798,138 + DvMF_3010 0.71 -1.2
3,798,227 - DvMF_3010 0.76 -1.7
3,798,384 - DvMF_3010 0.84 -1.5
3,798,490 - -1.4
3,798,654 + -2.1
3,798,823 + +0.3

Or see this region's nucleotide sequence