Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2960

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2958 and DvMF_2959 overlap by 1 nucleotidesDvMF_2959 and DvMF_2960 are separated by 335 nucleotides DvMF_2958: DvMF_2958 - heat shock protein Hsp20 (RefSeq), at 3,731,469 to 3,731,897 _2958 DvMF_2959: DvMF_2959 - heat shock protein Hsp20 (RefSeq), at 3,731,897 to 3,732,328 _2959 DvMF_2960: DvMF_2960 - Mg2 transporter protein CorA family protein (RefSeq), at 3,732,664 to 3,733,611 _2960 Position (kb) 3732 3733 3734Strain fitness (log2 ratio) -1 0 1 2at 3731.879 kb on + strandat 3732.201 kb on + strand, within DvMF_2959at 3732.247 kb on + strand, within DvMF_2959at 3732.375 kb on - strandat 3732.823 kb on - strand, within DvMF_2960at 3733.282 kb on - strand, within DvMF_2960at 3733.284 kb on + strand, within DvMF_2960at 3733.445 kb on - strand, within DvMF_2960at 3733.470 kb on + strand, within DvMF_2960at 3733.559 kb on - strandat 3733.748 kb on - strandat 3733.781 kb on - strandat 3733.781 kb on - strandat 3733.791 kb on - strandat 3733.965 kb on + strandat 3733.965 kb on + strandat 3734.084 kb on + strandat 3734.258 kb on - strandat 3734.387 kb on + strandat 3734.395 kb on - strandat 3734.395 kb on - strandat 3734.467 kb on - strandat 3734.484 kb on + strandat 3734.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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3,731,879 + -0.2
3,732,201 + DvMF_2959 0.70 -0.3
3,732,247 + DvMF_2959 0.81 -0.5
3,732,375 - -0.9
3,732,823 - DvMF_2960 0.17 -0.2
3,733,282 - DvMF_2960 0.65 -0.0
3,733,284 + DvMF_2960 0.65 -0.4
3,733,445 - DvMF_2960 0.82 -0.5
3,733,470 + DvMF_2960 0.85 -0.8
3,733,559 - -0.3
3,733,748 - -0.6
3,733,781 - +0.4
3,733,781 - -1.3
3,733,791 - -0.4
3,733,965 + -0.7
3,733,965 + -0.6
3,734,084 + -0.8
3,734,258 - +1.8
3,734,387 + +1.0
3,734,395 - +1.3
3,734,395 - +1.4
3,734,467 - +2.4
3,734,484 + +0.8
3,734,500 - +0.0

Or see this region's nucleotide sequence