Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2952

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2951 and DvMF_2952 are separated by 318 nucleotidesDvMF_2952 and DvMF_2953 are separated by 185 nucleotides DvMF_2951: DvMF_2951 - hypothetical protein (RefSeq), at 3,723,375 to 3,724,010 _2951 DvMF_2952: DvMF_2952 - metal dependent phosphohydrolase (RefSeq), at 3,724,329 to 3,724,952 _2952 DvMF_2953: DvMF_2953 - protein of unknown function DUF214 (RefSeq), at 3,725,138 to 3,726,358 _2953 Position (kb) 3724 3725Strain fitness (log2 ratio) -1 0 1at 3723.500 kb on - strand, within DvMF_2951at 3723.607 kb on + strand, within DvMF_2951at 3723.615 kb on - strand, within DvMF_2951at 3723.912 kb on + strand, within DvMF_2951at 3724.013 kb on - strandat 3724.013 kb on - strandat 3724.079 kb on + strandat 3724.120 kb on - strandat 3724.163 kb on - strandat 3724.644 kb on - strand, within DvMF_2952at 3724.688 kb on + strand, within DvMF_2952at 3724.754 kb on - strand, within DvMF_2952at 3724.758 kb on - strand, within DvMF_2952at 3724.991 kb on + strandat 3725.012 kb on + strandat 3725.012 kb on + strandat 3725.056 kb on - strandat 3725.056 kb on - strandat 3725.088 kb on + strandat 3725.286 kb on + strand, within DvMF_2953at 3725.525 kb on - strand, within DvMF_2953at 3725.883 kb on + strand, within DvMF_2953

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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3,723,500 - DvMF_2951 0.20 -0.9
3,723,607 + DvMF_2951 0.36 +0.3
3,723,615 - DvMF_2951 0.38 -0.5
3,723,912 + DvMF_2951 0.84 -0.8
3,724,013 - +0.3
3,724,013 - +0.1
3,724,079 + -0.6
3,724,120 - -0.7
3,724,163 - +0.3
3,724,644 - DvMF_2952 0.50 +0.5
3,724,688 + DvMF_2952 0.58 -0.5
3,724,754 - DvMF_2952 0.68 -0.5
3,724,758 - DvMF_2952 0.69 -0.7
3,724,991 + +0.2
3,725,012 + +0.5
3,725,012 + -0.5
3,725,056 - -1.4
3,725,056 - -0.2
3,725,088 + -0.3
3,725,286 + DvMF_2953 0.12 -1.2
3,725,525 - DvMF_2953 0.32 -1.2
3,725,883 + DvMF_2953 0.61 -1.0

Or see this region's nucleotide sequence