Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2917

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2916 and DvMF_2917 are separated by 268 nucleotidesDvMF_2917 and DvMF_2918 overlap by 4 nucleotidesDvMF_2918 and frr are separated by 170 nucleotides DvMF_2916: DvMF_2916 - Aromatic-L-amino-acid decarboxylase (RefSeq), at 3,686,346 to 3,687,878 _2916 DvMF_2917: DvMF_2917 - phosphatidate cytidylyltransferase (RefSeq), at 3,688,147 to 3,688,953 _2917 DvMF_2918: DvMF_2918 - undecaprenyl diphosphate synthase (RefSeq), at 3,688,950 to 3,689,702 _2918 DvMF_2919: frr - ribosome recycling factor (RefSeq), at 3,689,873 to 3,690,433 frr Position (kb) 3688 3689Strain fitness (log2 ratio) -1 0 1at 3688.091 kb on + strandat 3689.715 kb on - strandat 3689.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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3,688,091 + +0.1
3,689,715 - +0.1
3,689,846 - +0.5

Or see this region's nucleotide sequence