Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2627

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2626 and DvMF_2627 are separated by 395 nucleotidesDvMF_2627 and DvMF_2628 are separated by 239 nucleotides DvMF_2626: DvMF_2626 - butyrate kinase (RefSeq), at 3,316,532 to 3,317,893 _2626 DvMF_2627: DvMF_2627 - transcriptional regulator, TetR family (RefSeq), at 3,318,289 to 3,318,849 _2627 DvMF_2628: DvMF_2628 - hypothetical protein (RefSeq), at 3,319,089 to 3,320,864 _2628 Position (kb) 3318 3319Strain fitness (log2 ratio) -1 0 1at 3317.953 kb on + strandat 3317.953 kb on + strandat 3317.961 kb on - strandat 3318.138 kb on + strandat 3318.150 kb on + strandat 3318.654 kb on + strand, within DvMF_2627at 3318.662 kb on - strand, within DvMF_2627at 3318.760 kb on + strand, within DvMF_2627at 3318.821 kb on + strandat 3319.136 kb on - strandat 3319.390 kb on - strand, within DvMF_2628at 3319.658 kb on + strand, within DvMF_2628

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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3,317,953 + -0.5
3,317,953 + -1.0
3,317,961 - -0.4
3,318,138 + -0.2
3,318,150 + -0.2
3,318,654 + DvMF_2627 0.65 -0.6
3,318,662 - DvMF_2627 0.66 +0.9
3,318,760 + DvMF_2627 0.84 -0.7
3,318,821 + -1.2
3,319,136 - -0.3
3,319,390 - DvMF_2628 0.17 +1.0
3,319,658 + DvMF_2628 0.32 -0.3

Or see this region's nucleotide sequence