Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2340 and DvMF_2341 are separated by 568 nucleotides DvMF_2341 and DvMF_2342 are separated by 28 nucleotides DvMF_2342 and DvMF_2343 are separated by 31 nucleotides DvMF_2343 and DvMF_2344 are separated by 76 nucleotides
DvMF_2340: DvMF_2340 - Sigma 54 interacting domain protein (RefSeq), at 2,949,515 to 2,952,328
_2340
DvMF_2341: DvMF_2341 - hypothetical protein (RefSeq), at 2,952,897 to 2,953,190
_2341
DvMF_2342: DvMF_2342 - protein of unknown function DUF81 (RefSeq), at 2,953,219 to 2,954,271
_2342
DvMF_2343: DvMF_2343 - lipoprotein, putative (RefSeq), at 2,954,303 to 2,954,908
_2343
DvMF_2344: DvMF_2344 - hypothetical protein (RefSeq), at 2,954,985 to 2,955,278
_2344
Position (kb)
2953
2954
2955 Strain fitness (log2 ratio)
-1
0
1 at 2953.024 kb on + strand, within DvMF_2341 at 2953.201 kb on + strand at 2953.427 kb on + strand, within DvMF_2342 at 2953.759 kb on + strand, within DvMF_2342 at 2953.764 kb on + strand, within DvMF_2342 at 2953.863 kb on + strand, within DvMF_2342 at 2954.046 kb on + strand, within DvMF_2342 at 2954.071 kb on + strand, within DvMF_2342 at 2954.135 kb on - strand, within DvMF_2342 at 2954.142 kb on + strand, within DvMF_2342 at 2954.349 kb on + strand at 2954.369 kb on - strand, within DvMF_2343 at 2954.432 kb on + strand, within DvMF_2343 at 2954.490 kb on + strand, within DvMF_2343 at 2954.490 kb on + strand, within DvMF_2343 at 2954.490 kb on + strand, within DvMF_2343 at 2954.498 kb on - strand, within DvMF_2343 at 2954.498 kb on - strand, within DvMF_2343 at 2954.848 kb on + strand at 2955.011 kb on - strand at 2955.044 kb on + strand, within DvMF_2344 at 2955.144 kb on + strand, within DvMF_2344 at 2955.152 kb on - strand, within DvMF_2344
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml remove 2,953,024 + DvMF_2341 0.43 -1.3 2,953,201 + +0.1 2,953,427 + DvMF_2342 0.20 -0.2 2,953,759 + DvMF_2342 0.51 -0.3 2,953,764 + DvMF_2342 0.52 -0.2 2,953,863 + DvMF_2342 0.61 -0.2 2,954,046 + DvMF_2342 0.79 -0.5 2,954,071 + DvMF_2342 0.81 -0.7 2,954,135 - DvMF_2342 0.87 -0.3 2,954,142 + DvMF_2342 0.88 +1.0 2,954,349 + -1.4 2,954,369 - DvMF_2343 0.11 +0.1 2,954,432 + DvMF_2343 0.21 -1.0 2,954,490 + DvMF_2343 0.31 -0.4 2,954,490 + DvMF_2343 0.31 -0.7 2,954,490 + DvMF_2343 0.31 -0.6 2,954,498 - DvMF_2343 0.32 -0.2 2,954,498 - DvMF_2343 0.32 -0.1 2,954,848 + -0.6 2,955,011 - -0.4 2,955,044 + DvMF_2344 0.20 -1.3 2,955,144 + DvMF_2344 0.54 -0.3 2,955,152 - DvMF_2344 0.57 -0.4
Or see this region's nucleotide sequence