Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2233 and DvMF_2234 are separated by 348 nucleotides DvMF_2234 and DvMF_2235 are separated by 227 nucleotides
DvMF_2233: DvMF_2233 - carbon-monoxide dehydrogenase, catalytic subunit (RefSeq), at 2,794,183 to 2,796,072
_2233
DvMF_2234: DvMF_2234 - transcriptional regulator, Crp/Fnr family (RefSeq), at 2,796,421 to 2,797,263
_2234
DvMF_2235: DvMF_2235 - translation initiation factor, aIF-2BI family (RefSeq), at 2,797,491 to 2,798,543
_2235
Position (kb)
2796
2797
2798 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2795.461 kb on + strand, within DvMF_2233 at 2795.514 kb on + strand, within DvMF_2233 at 2795.520 kb on + strand, within DvMF_2233 at 2795.538 kb on - strand, within DvMF_2233 at 2795.580 kb on - strand, within DvMF_2233 at 2795.635 kb on + strand, within DvMF_2233 at 2795.718 kb on + strand, within DvMF_2233 at 2795.732 kb on - strand, within DvMF_2233 at 2795.771 kb on - strand, within DvMF_2233 at 2795.982 kb on - strand at 2796.433 kb on - strand at 2796.630 kb on - strand, within DvMF_2234 at 2796.845 kb on + strand, within DvMF_2234 at 2796.947 kb on + strand, within DvMF_2234 at 2797.436 kb on + strand at 2797.493 kb on + strand at 2797.726 kb on + strand, within DvMF_2235 at 2797.899 kb on + strand, within DvMF_2235 at 2797.939 kb on - strand, within DvMF_2235 at 2798.079 kb on + strand, within DvMF_2235 at 2798.103 kb on + strand, within DvMF_2235 at 2798.231 kb on - strand, within DvMF_2235 at 2798.244 kb on + strand, within DvMF_2235 at 2798.252 kb on - strand, within DvMF_2235 at 2798.259 kb on - strand, within DvMF_2235
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml remove 2,795,461 + DvMF_2233 0.68 -1.0 2,795,514 + DvMF_2233 0.70 -1.0 2,795,520 + DvMF_2233 0.71 -2.0 2,795,538 - DvMF_2233 0.72 -0.9 2,795,580 - DvMF_2233 0.74 -0.6 2,795,635 + DvMF_2233 0.77 +0.7 2,795,718 + DvMF_2233 0.81 -0.0 2,795,732 - DvMF_2233 0.82 -1.3 2,795,771 - DvMF_2233 0.84 -1.4 2,795,982 - +0.0 2,796,433 - -1.1 2,796,630 - DvMF_2234 0.25 -1.1 2,796,845 + DvMF_2234 0.50 -0.6 2,796,947 + DvMF_2234 0.62 -0.7 2,797,436 + -0.1 2,797,493 + -0.3 2,797,726 + DvMF_2235 0.22 -2.8 2,797,899 + DvMF_2235 0.39 -0.6 2,797,939 - DvMF_2235 0.43 -0.8 2,798,079 + DvMF_2235 0.56 -1.0 2,798,103 + DvMF_2235 0.58 +0.2 2,798,231 - DvMF_2235 0.70 +0.2 2,798,244 + DvMF_2235 0.72 -1.1 2,798,252 - DvMF_2235 0.72 -0.4 2,798,259 - DvMF_2235 0.73 -0.6
Or see this region's nucleotide sequence