Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2234

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2233 and DvMF_2234 are separated by 348 nucleotidesDvMF_2234 and DvMF_2235 are separated by 227 nucleotides DvMF_2233: DvMF_2233 - carbon-monoxide dehydrogenase, catalytic subunit (RefSeq), at 2,794,183 to 2,796,072 _2233 DvMF_2234: DvMF_2234 - transcriptional regulator, Crp/Fnr family (RefSeq), at 2,796,421 to 2,797,263 _2234 DvMF_2235: DvMF_2235 - translation initiation factor, aIF-2BI family (RefSeq), at 2,797,491 to 2,798,543 _2235 Position (kb) 2796 2797 2798Strain fitness (log2 ratio) -3 -2 -1 0 1at 2795.461 kb on + strand, within DvMF_2233at 2795.514 kb on + strand, within DvMF_2233at 2795.520 kb on + strand, within DvMF_2233at 2795.538 kb on - strand, within DvMF_2233at 2795.580 kb on - strand, within DvMF_2233at 2795.635 kb on + strand, within DvMF_2233at 2795.718 kb on + strand, within DvMF_2233at 2795.732 kb on - strand, within DvMF_2233at 2795.771 kb on - strand, within DvMF_2233at 2795.982 kb on - strandat 2796.433 kb on - strandat 2796.630 kb on - strand, within DvMF_2234at 2796.845 kb on + strand, within DvMF_2234at 2796.947 kb on + strand, within DvMF_2234at 2797.436 kb on + strandat 2797.493 kb on + strandat 2797.726 kb on + strand, within DvMF_2235at 2797.899 kb on + strand, within DvMF_2235at 2797.939 kb on - strand, within DvMF_2235at 2798.079 kb on + strand, within DvMF_2235at 2798.103 kb on + strand, within DvMF_2235at 2798.231 kb on - strand, within DvMF_2235at 2798.244 kb on + strand, within DvMF_2235at 2798.252 kb on - strand, within DvMF_2235at 2798.259 kb on - strand, within DvMF_2235

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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2,795,461 + DvMF_2233 0.68 -1.0
2,795,514 + DvMF_2233 0.70 -1.0
2,795,520 + DvMF_2233 0.71 -2.0
2,795,538 - DvMF_2233 0.72 -0.9
2,795,580 - DvMF_2233 0.74 -0.6
2,795,635 + DvMF_2233 0.77 +0.7
2,795,718 + DvMF_2233 0.81 -0.0
2,795,732 - DvMF_2233 0.82 -1.3
2,795,771 - DvMF_2233 0.84 -1.4
2,795,982 - +0.0
2,796,433 - -1.1
2,796,630 - DvMF_2234 0.25 -1.1
2,796,845 + DvMF_2234 0.50 -0.6
2,796,947 + DvMF_2234 0.62 -0.7
2,797,436 + -0.1
2,797,493 + -0.3
2,797,726 + DvMF_2235 0.22 -2.8
2,797,899 + DvMF_2235 0.39 -0.6
2,797,939 - DvMF_2235 0.43 -0.8
2,798,079 + DvMF_2235 0.56 -1.0
2,798,103 + DvMF_2235 0.58 +0.2
2,798,231 - DvMF_2235 0.70 +0.2
2,798,244 + DvMF_2235 0.72 -1.1
2,798,252 - DvMF_2235 0.72 -0.4
2,798,259 - DvMF_2235 0.73 -0.6

Or see this region's nucleotide sequence