Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2052

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2051 and DvMF_2052 are separated by 232 nucleotidesDvMF_2052 and DvMF_2053 are separated by 209 nucleotides DvMF_2051: DvMF_2051 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (RefSeq), at 2,543,183 to 2,544,430 _2051 DvMF_2052: DvMF_2052 - hypothetical protein (RefSeq), at 2,544,663 to 2,545,223 _2052 DvMF_2053: DvMF_2053 - S-adenosylmethionine/tRNA-ribosyltransferase- isomerase (RefSeq), at 2,545,433 to 2,546,686 _2053 Position (kb) 2544 2545 2546Strain fitness (log2 ratio) -2 -1 0 1at 2544.459 kb on - strandat 2544.490 kb on - strandat 2544.492 kb on + strandat 2544.500 kb on - strandat 2544.519 kb on + strandat 2544.572 kb on - strandat 2544.683 kb on - strandat 2544.771 kb on - strand, within DvMF_2052at 2544.798 kb on - strand, within DvMF_2052at 2544.826 kb on - strand, within DvMF_2052at 2544.829 kb on + strand, within DvMF_2052at 2544.837 kb on - strand, within DvMF_2052at 2544.837 kb on - strand, within DvMF_2052at 2544.931 kb on - strand, within DvMF_2052at 2544.933 kb on - strand, within DvMF_2052at 2544.966 kb on - strand, within DvMF_2052at 2545.039 kb on + strand, within DvMF_2052at 2545.047 kb on - strand, within DvMF_2052at 2545.058 kb on - strand, within DvMF_2052at 2545.233 kb on - strandat 2545.233 kb on - strandat 2545.233 kb on - strandat 2545.419 kb on - strandat 2545.427 kb on + strandat 2545.427 kb on + strandat 2545.613 kb on + strand, within DvMF_2053at 2545.671 kb on - strand, within DvMF_2053at 2545.730 kb on + strand, within DvMF_2053at 2545.804 kb on - strand, within DvMF_2053at 2545.897 kb on - strand, within DvMF_2053at 2546.068 kb on + strand, within DvMF_2053at 2546.136 kb on - strand, within DvMF_2053at 2546.151 kb on - strand, within DvMF_2053at 2546.158 kb on + strand, within DvMF_2053at 2546.161 kb on - strand, within DvMF_2053at 2546.196 kb on + strand, within DvMF_2053

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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2,544,459 - +0.3
2,544,490 - -0.1
2,544,492 + -0.5
2,544,500 - -0.6
2,544,519 + -0.6
2,544,572 - -0.0
2,544,683 - -1.6
2,544,771 - DvMF_2052 0.19 -1.8
2,544,798 - DvMF_2052 0.24 -1.8
2,544,826 - DvMF_2052 0.29 -2.1
2,544,829 + DvMF_2052 0.30 -1.3
2,544,837 - DvMF_2052 0.31 -0.5
2,544,837 - DvMF_2052 0.31 -1.1
2,544,931 - DvMF_2052 0.48 -1.0
2,544,933 - DvMF_2052 0.48 -1.4
2,544,966 - DvMF_2052 0.54 -1.7
2,545,039 + DvMF_2052 0.67 -1.2
2,545,047 - DvMF_2052 0.68 -1.5
2,545,058 - DvMF_2052 0.70 -1.1
2,545,233 - -0.6
2,545,233 - -2.6
2,545,233 - -1.1
2,545,419 - -0.0
2,545,427 + -0.5
2,545,427 + -0.5
2,545,613 + DvMF_2053 0.14 -0.3
2,545,671 - DvMF_2053 0.19 -1.2
2,545,730 + DvMF_2053 0.24 -1.2
2,545,804 - DvMF_2053 0.30 -0.2
2,545,897 - DvMF_2053 0.37 -0.7
2,546,068 + DvMF_2053 0.51 -1.2
2,546,136 - DvMF_2053 0.56 -1.2
2,546,151 - DvMF_2053 0.57 -0.5
2,546,158 + DvMF_2053 0.58 -1.4
2,546,161 - DvMF_2053 0.58 -0.4
2,546,196 + DvMF_2053 0.61 -0.1

Or see this region's nucleotide sequence