Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2050

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2049 and DvMF_2050 are separated by 580 nucleotidesDvMF_2050 and DvMF_2051 overlap by 19 nucleotides DvMF_2049: DvMF_2049 - band 7 protein (RefSeq), at 2,540,819 to 2,541,568 _2049 DvMF_2050: DvMF_2050 - hypothetical protein (RefSeq), at 2,542,149 to 2,543,201 _2050 DvMF_2051: DvMF_2051 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (RefSeq), at 2,543,183 to 2,544,430 _2051 Position (kb) 2542 2543 2544Strain fitness (log2 ratio) -2 -1 0 1at 2541.186 kb on - strand, within DvMF_2049at 2541.190 kb on + strand, within DvMF_2049at 2541.212 kb on + strand, within DvMF_2049at 2541.217 kb on + strand, within DvMF_2049at 2541.225 kb on - strand, within DvMF_2049at 2541.229 kb on - strand, within DvMF_2049at 2541.229 kb on - strand, within DvMF_2049at 2541.229 kb on - strand, within DvMF_2049at 2541.240 kb on - strand, within DvMF_2049at 2541.243 kb on + strand, within DvMF_2049at 2541.292 kb on + strand, within DvMF_2049at 2541.371 kb on - strand, within DvMF_2049at 2541.377 kb on + strand, within DvMF_2049at 2541.434 kb on + strand, within DvMF_2049at 2541.454 kb on + strand, within DvMF_2049at 2541.504 kb on - strandat 2541.504 kb on - strandat 2541.504 kb on - strandat 2541.506 kb on + strandat 2541.594 kb on - strandat 2541.647 kb on + strandat 2541.729 kb on + strandat 2541.764 kb on + strandat 2541.772 kb on + strandat 2541.784 kb on + strandat 2541.884 kb on - strandat 2541.950 kb on - strandat 2541.995 kb on - strandat 2542.019 kb on - strandat 2542.021 kb on + strandat 2542.035 kb on + strandat 2542.046 kb on + strandat 2542.054 kb on - strandat 2542.102 kb on - strandat 2542.170 kb on - strandat 2542.172 kb on - strandat 2542.172 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
remove
2,541,186 - DvMF_2049 0.49 -0.4
2,541,190 + DvMF_2049 0.49 -1.3
2,541,212 + DvMF_2049 0.52 -1.9
2,541,217 + DvMF_2049 0.53 -1.3
2,541,225 - DvMF_2049 0.54 -0.2
2,541,229 - DvMF_2049 0.55 -0.3
2,541,229 - DvMF_2049 0.55 -0.3
2,541,229 - DvMF_2049 0.55 -0.6
2,541,240 - DvMF_2049 0.56 +0.1
2,541,243 + DvMF_2049 0.57 -0.2
2,541,292 + DvMF_2049 0.63 -0.8
2,541,371 - DvMF_2049 0.74 -0.3
2,541,377 + DvMF_2049 0.74 -0.4
2,541,434 + DvMF_2049 0.82 -0.2
2,541,454 + DvMF_2049 0.85 -0.0
2,541,504 - -0.5
2,541,504 - -0.8
2,541,504 - -0.6
2,541,506 + -1.2
2,541,594 - -0.1
2,541,647 + -0.3
2,541,729 + -1.0
2,541,764 + -0.5
2,541,772 + +0.2
2,541,784 + -0.3
2,541,884 - -0.1
2,541,950 - -0.4
2,541,995 - -0.3
2,542,019 - -0.7
2,542,021 + -1.0
2,542,035 + -0.9
2,542,046 + -0.4
2,542,054 - +0.5
2,542,102 - -0.2
2,542,170 - -0.4
2,542,172 - -0.3
2,542,172 - -0.7

Or see this region's nucleotide sequence