Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2029

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2028 and DvMF_2029 are separated by 302 nucleotidesDvMF_2029 and DvMF_2030 are separated by 265 nucleotides DvMF_2028: DvMF_2028 - NLP/P60 protein (RefSeq), at 2,513,208 to 2,513,909 _2028 DvMF_2029: DvMF_2029 - histone family protein DNA-binding protein (RefSeq), at 2,514,212 to 2,514,499 _2029 DvMF_2030: DvMF_2030 - MerR family transcriptional regulator (RefSeq), at 2,514,765 to 2,515,484 _2030 Position (kb) 2514 2515Strain fitness (log2 ratio) -2 -1 0 1at 2513.247 kb on + strandat 2513.337 kb on + strand, within DvMF_2028at 2513.405 kb on - strand, within DvMF_2028at 2513.552 kb on + strand, within DvMF_2028at 2513.580 kb on + strand, within DvMF_2028at 2513.590 kb on + strand, within DvMF_2028at 2513.634 kb on - strand, within DvMF_2028at 2513.699 kb on - strand, within DvMF_2028at 2513.747 kb on + strand, within DvMF_2028at 2513.755 kb on - strand, within DvMF_2028at 2513.788 kb on + strand, within DvMF_2028at 2513.903 kb on + strandat 2514.048 kb on - strandat 2514.050 kb on + strandat 2514.187 kb on - strandat 2514.558 kb on + strandat 2514.697 kb on + strandat 2514.981 kb on + strand, within DvMF_2030at 2515.197 kb on + strand, within DvMF_2030at 2515.212 kb on - strand, within DvMF_2030at 2515.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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2,513,247 + -0.4
2,513,337 + DvMF_2028 0.18 +0.5
2,513,405 - DvMF_2028 0.28 -0.2
2,513,552 + DvMF_2028 0.49 -0.5
2,513,580 + DvMF_2028 0.53 -0.8
2,513,590 + DvMF_2028 0.54 -0.6
2,513,634 - DvMF_2028 0.61 -0.7
2,513,699 - DvMF_2028 0.70 +0.5
2,513,747 + DvMF_2028 0.77 -0.9
2,513,755 - DvMF_2028 0.78 +0.2
2,513,788 + DvMF_2028 0.83 -0.4
2,513,903 + -0.2
2,514,048 - -0.2
2,514,050 + -0.3
2,514,187 - -1.4
2,514,558 + -2.0
2,514,697 + -0.4
2,514,981 + DvMF_2030 0.30 -0.2
2,515,197 + DvMF_2030 0.60 -0.3
2,515,212 - DvMF_2030 0.62 -1.0
2,515,432 + -0.1

Or see this region's nucleotide sequence