Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1947

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1946 and DvMF_1947 are separated by 194 nucleotides DvMF_1946: DvMF_1946 - Phosphoribosylaminoimidazolecarboxamide formyltransferase (RefSeq), at 2,403,764 to 2,404,363 _1946 DvMF_1947: DvMF_1947 - GTP-binding proten HflX (RefSeq), at 2,404,558 to 2,406,525 _1947 Position (kb) 2404 2405 2406 2407Strain fitness (log2 ratio) -2 -1 0 1at 2403.701 kb on - strandat 2403.902 kb on + strand, within DvMF_1946at 2403.917 kb on + strand, within DvMF_1946at 2404.014 kb on + strand, within DvMF_1946at 2404.026 kb on + strand, within DvMF_1946at 2404.071 kb on + strand, within DvMF_1946at 2404.074 kb on - strand, within DvMF_1946at 2404.212 kb on - strand, within DvMF_1946at 2404.369 kb on + strandat 2404.666 kb on + strandat 2404.746 kb on + strandat 2405.052 kb on + strand, within DvMF_1947at 2405.052 kb on + strand, within DvMF_1947at 2405.390 kb on + strand, within DvMF_1947at 2405.398 kb on - strand, within DvMF_1947at 2405.483 kb on - strand, within DvMF_1947at 2405.557 kb on + strand, within DvMF_1947at 2405.557 kb on + strand, within DvMF_1947at 2405.573 kb on + strand, within DvMF_1947at 2405.713 kb on - strand, within DvMF_1947at 2405.786 kb on - strand, within DvMF_1947at 2405.896 kb on - strand, within DvMF_1947at 2405.898 kb on + strand, within DvMF_1947at 2405.918 kb on - strand, within DvMF_1947at 2406.056 kb on - strand, within DvMF_1947at 2406.122 kb on + strand, within DvMF_1947at 2406.437 kb on + strandat 2406.484 kb on + strandat 2406.943 kb on - strandat 2407.022 kb on - strandat 2407.135 kb on + strandat 2407.135 kb on + strandat 2407.411 kb on + strandat 2407.463 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
remove
2,403,701 - -0.5
2,403,902 + DvMF_1946 0.23 +0.9
2,403,917 + DvMF_1946 0.26 -1.2
2,404,014 + DvMF_1946 0.42 -0.4
2,404,026 + DvMF_1946 0.44 -0.7
2,404,071 + DvMF_1946 0.51 +0.2
2,404,074 - DvMF_1946 0.52 -0.9
2,404,212 - DvMF_1946 0.75 -2.5
2,404,369 + -0.4
2,404,666 + +0.2
2,404,746 + -0.3
2,405,052 + DvMF_1947 0.25 +0.0
2,405,052 + DvMF_1947 0.25 -0.4
2,405,390 + DvMF_1947 0.42 -0.4
2,405,398 - DvMF_1947 0.43 -0.7
2,405,483 - DvMF_1947 0.47 -0.5
2,405,557 + DvMF_1947 0.51 -0.4
2,405,557 + DvMF_1947 0.51 +0.0
2,405,573 + DvMF_1947 0.52 -0.5
2,405,713 - DvMF_1947 0.59 +0.3
2,405,786 - DvMF_1947 0.62 +1.1
2,405,896 - DvMF_1947 0.68 -0.5
2,405,898 + DvMF_1947 0.68 +0.0
2,405,918 - DvMF_1947 0.69 -0.0
2,406,056 - DvMF_1947 0.76 +0.3
2,406,122 + DvMF_1947 0.79 -0.3
2,406,437 + -1.5
2,406,484 + +0.7
2,406,943 - -0.4
2,407,022 - +0.4
2,407,135 + +0.0
2,407,135 + -0.3
2,407,411 + -0.2
2,407,463 + -0.4

Or see this region's nucleotide sequence