Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1908

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1907 and DvMF_1908 are separated by 433 nucleotidesDvMF_1908 and DvMF_1909 are separated by 263 nucleotides DvMF_1907: DvMF_1907 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 2,348,832 to 2,351,996 _1907 DvMF_1908: DvMF_1908 - glucose-1-phosphate cytidylyltransferase (RefSeq), at 2,352,430 to 2,353,212 _1908 DvMF_1909: DvMF_1909 - CDP-glucose 4,6-dehydratase (RefSeq), at 2,353,476 to 2,354,585 _1909 Position (kb) 2352 2353 2354Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2351.466 kb on - strand, within DvMF_1907at 2351.477 kb on - strand, within DvMF_1907at 2351.560 kb on + strand, within DvMF_1907at 2352.065 kb on + strandat 2352.083 kb on + strandat 2352.335 kb on - strandat 2352.663 kb on + strand, within DvMF_1908at 2352.742 kb on + strand, within DvMF_1908at 2352.767 kb on - strand, within DvMF_1908at 2353.362 kb on - strandat 2353.418 kb on + strandat 2353.658 kb on - strand, within DvMF_1909at 2353.688 kb on + strand, within DvMF_1909at 2353.688 kb on + strand, within DvMF_1909at 2353.943 kb on - strand, within DvMF_1909at 2353.943 kb on - strand, within DvMF_1909at 2354.180 kb on + strand, within DvMF_1909

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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2,351,466 - DvMF_1907 0.83 -0.2
2,351,477 - DvMF_1907 0.84 -0.4
2,351,560 + DvMF_1907 0.86 -0.4
2,352,065 + -0.5
2,352,083 + -0.2
2,352,335 - +0.2
2,352,663 + DvMF_1908 0.30 -2.8
2,352,742 + DvMF_1908 0.40 -4.2
2,352,767 - DvMF_1908 0.43 -2.2
2,353,362 - -0.0
2,353,418 + -0.3
2,353,658 - DvMF_1909 0.16 -4.1
2,353,688 + DvMF_1909 0.19 -4.3
2,353,688 + DvMF_1909 0.19 -5.1
2,353,943 - DvMF_1909 0.42 -3.5
2,353,943 - DvMF_1909 0.42 -3.5
2,354,180 + DvMF_1909 0.63 -3.1

Or see this region's nucleotide sequence