Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1440

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1439 and DvMF_1440 are separated by 11 nucleotidesDvMF_1440 and DvMF_1441 are separated by 124 nucleotides DvMF_1439: DvMF_1439 - putative phytochrome sensor protein (RefSeq), at 1,761,165 to 1,761,728 _1439 DvMF_1440: DvMF_1440 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 1,761,740 to 1,762,756 _1440 DvMF_1441: DvMF_1441 - hemolysin A (RefSeq), at 1,762,881 to 1,763,711 _1441 Position (kb) 1761 1762 1763Strain fitness (log2 ratio) -1 0 1at 1760.750 kb on + strandat 1760.893 kb on - strandat 1761.149 kb on + strandat 1761.293 kb on + strand, within DvMF_1439at 1761.301 kb on - strand, within DvMF_1439at 1761.341 kb on - strand, within DvMF_1439at 1761.420 kb on + strand, within DvMF_1439at 1761.522 kb on - strand, within DvMF_1439at 1761.707 kb on - strandat 1761.723 kb on + strandat 1761.723 kb on + strandat 1761.801 kb on - strandat 1761.811 kb on - strandat 1761.817 kb on + strandat 1761.850 kb on + strand, within DvMF_1440at 1761.970 kb on - strand, within DvMF_1440at 1762.063 kb on - strand, within DvMF_1440at 1762.248 kb on - strand, within DvMF_1440at 1762.258 kb on + strand, within DvMF_1440at 1762.258 kb on + strand, within DvMF_1440at 1762.266 kb on - strand, within DvMF_1440at 1762.336 kb on - strand, within DvMF_1440at 1762.428 kb on - strand, within DvMF_1440at 1762.594 kb on + strand, within DvMF_1440at 1762.869 kb on + strandat 1762.961 kb on - strandat 1763.293 kb on + strand, within DvMF_1441at 1763.293 kb on + strand, within DvMF_1441at 1763.301 kb on - strand, within DvMF_1441at 1763.313 kb on + strand, within DvMF_1441at 1763.572 kb on + strand, within DvMF_1441at 1763.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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1,760,750 + -0.8
1,760,893 - -0.3
1,761,149 + +0.5
1,761,293 + DvMF_1439 0.23 -0.7
1,761,301 - DvMF_1439 0.24 +0.1
1,761,341 - DvMF_1439 0.31 +0.4
1,761,420 + DvMF_1439 0.45 -0.6
1,761,522 - DvMF_1439 0.63 -0.2
1,761,707 - +0.2
1,761,723 + -0.6
1,761,723 + +0.3
1,761,801 - +0.5
1,761,811 - -0.8
1,761,817 + +0.3
1,761,850 + DvMF_1440 0.11 +0.4
1,761,970 - DvMF_1440 0.23 +0.4
1,762,063 - DvMF_1440 0.32 +0.5
1,762,248 - DvMF_1440 0.50 +0.4
1,762,258 + DvMF_1440 0.51 +0.7
1,762,258 + DvMF_1440 0.51 +0.4
1,762,266 - DvMF_1440 0.52 -0.0
1,762,336 - DvMF_1440 0.59 +0.6
1,762,428 - DvMF_1440 0.68 +0.4
1,762,594 + DvMF_1440 0.84 -0.4
1,762,869 + -0.1
1,762,961 - +0.5
1,763,293 + DvMF_1441 0.50 +0.9
1,763,293 + DvMF_1441 0.50 +0.6
1,763,301 - DvMF_1441 0.51 +0.3
1,763,313 + DvMF_1441 0.52 +1.0
1,763,572 + DvMF_1441 0.83 +0.4
1,763,707 - +0.3

Or see this region's nucleotide sequence