Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1084 and DvMF_1085 are separated by 67 nucleotides DvMF_1085 and DvMF_1086 are separated by 9 nucleotides DvMF_1086 and DvMF_1087 are separated by 397 nucleotides
DvMF_1084: DvMF_1084 - OmpA/MotB domain protein (RefSeq), at 1,323,133 to 1,323,858
_1084
DvMF_1085: DvMF_1085 - flagellar motor protein MotA (RefSeq), at 1,323,926 to 1,324,771
_1085
DvMF_1086: DvMF_1086 - hypothetical protein (RefSeq), at 1,324,781 to 1,325,494
_1086
DvMF_1087: DvMF_1087 - hypothetical protein (RefSeq), at 1,325,892 to 1,326,509
_1087
Position (kb)
1324
1325
1326 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1324.062 kb on + strand, within DvMF_1085 at 1324.072 kb on - strand, within DvMF_1085 at 1324.138 kb on - strand, within DvMF_1085 at 1324.167 kb on + strand, within DvMF_1085 at 1324.232 kb on - strand, within DvMF_1085 at 1324.608 kb on - strand, within DvMF_1085 at 1324.608 kb on - strand, within DvMF_1085 at 1324.857 kb on - strand, within DvMF_1086 at 1325.112 kb on + strand, within DvMF_1086 at 1325.236 kb on + strand, within DvMF_1086 at 1325.294 kb on + strand, within DvMF_1086 at 1325.442 kb on + strand at 1325.640 kb on + strand at 1325.712 kb on + strand at 1325.915 kb on - strand at 1326.056 kb on + strand, within DvMF_1087 at 1326.110 kb on - strand, within DvMF_1087 at 1326.259 kb on - strand, within DvMF_1087 at 1326.264 kb on + strand, within DvMF_1087 at 1326.340 kb on + strand, within DvMF_1087 at 1326.422 kb on - strand, within DvMF_1087 at 1326.464 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml remove 1,324,062 + DvMF_1085 0.16 +2.6 1,324,072 - DvMF_1085 0.17 +3.4 1,324,138 - DvMF_1085 0.25 +3.0 1,324,167 + DvMF_1085 0.28 +3.1 1,324,232 - DvMF_1085 0.36 +3.1 1,324,608 - DvMF_1085 0.81 +3.3 1,324,608 - DvMF_1085 0.81 +3.4 1,324,857 - DvMF_1086 0.11 -0.1 1,325,112 + DvMF_1086 0.46 -0.2 1,325,236 + DvMF_1086 0.64 +0.8 1,325,294 + DvMF_1086 0.72 +1.0 1,325,442 + -0.2 1,325,640 + -0.6 1,325,712 + -1.8 1,325,915 - -1.0 1,326,056 + DvMF_1087 0.27 -0.4 1,326,110 - DvMF_1087 0.35 -0.1 1,326,259 - DvMF_1087 0.59 -0.7 1,326,264 + DvMF_1087 0.60 +0.3 1,326,340 + DvMF_1087 0.72 -0.5 1,326,422 - DvMF_1087 0.86 -1.1 1,326,464 - -0.8
Or see this region's nucleotide sequence