Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0923

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0922 and DvMF_0923 are separated by 13 nucleotidesDvMF_0923 and DvMF_0924 are separated by 142 nucleotides DvMF_0922: DvMF_0922 - hypothetical protein (RefSeq), at 1,113,896 to 1,115,659 _0922 DvMF_0923: DvMF_0923 - SMC domain protein (RefSeq), at 1,115,673 to 1,117,325 _0923 DvMF_0924: DvMF_0924 - hypothetical protein (RefSeq), at 1,117,468 to 1,119,033 _0924 Position (kb) 1115 1116 1117 1118Strain fitness (log2 ratio) -1 0 1at 1114.706 kb on + strand, within DvMF_0922at 1114.791 kb on - strand, within DvMF_0922at 1115.085 kb on + strand, within DvMF_0922at 1115.315 kb on - strand, within DvMF_0922at 1115.393 kb on + strand, within DvMF_0922at 1115.489 kb on + strandat 1115.653 kb on + strandat 1115.772 kb on + strandat 1116.266 kb on + strand, within DvMF_0923at 1116.351 kb on - strand, within DvMF_0923at 1116.360 kb on + strand, within DvMF_0923at 1116.908 kb on - strand, within DvMF_0923at 1116.934 kb on + strand, within DvMF_0923at 1117.138 kb on + strand, within DvMF_0923at 1117.216 kb on + strandat 1117.441 kb on + strandat 1117.560 kb on + strandat 1117.594 kb on + strandat 1117.602 kb on - strandat 1117.759 kb on - strand, within DvMF_0924at 1117.860 kb on - strand, within DvMF_0924at 1117.968 kb on + strand, within DvMF_0924at 1118.131 kb on - strand, within DvMF_0924

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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1,114,706 + DvMF_0922 0.46 -0.3
1,114,791 - DvMF_0922 0.51 -0.6
1,115,085 + DvMF_0922 0.67 -0.6
1,115,315 - DvMF_0922 0.80 -0.7
1,115,393 + DvMF_0922 0.85 -0.5
1,115,489 + -0.1
1,115,653 + +0.8
1,115,772 + -0.3
1,116,266 + DvMF_0923 0.36 -0.5
1,116,351 - DvMF_0923 0.41 -0.4
1,116,360 + DvMF_0923 0.42 -0.6
1,116,908 - DvMF_0923 0.75 +0.2
1,116,934 + DvMF_0923 0.76 +0.6
1,117,138 + DvMF_0923 0.89 -0.6
1,117,216 + -0.6
1,117,441 + -0.5
1,117,560 + +0.2
1,117,594 + +0.1
1,117,602 - +0.3
1,117,759 - DvMF_0924 0.19 +0.3
1,117,860 - DvMF_0924 0.25 +0.5
1,117,968 + DvMF_0924 0.32 +0.2
1,118,131 - DvMF_0924 0.42 -0.6

Or see this region's nucleotide sequence