Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0887

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrmE and DvMF_0887 are separated by 185 nucleotidesDvMF_0887 and DvMF_0888 are separated by 158 nucleotides DvMF_0886: trmE - tRNA modification GTPase TrmE (RefSeq), at 1,069,223 to 1,070,659 trmE DvMF_0887: DvMF_0887 - single-stranded nucleic acid binding R3H domain protein (RefSeq), at 1,070,845 to 1,072,341 _0887 DvMF_0888: DvMF_0888 - 60 kDa inner membrane insertion protein (RefSeq), at 1,072,500 to 1,074,119 _0888 Position (kb) 1070 1071 1072 1073Strain fitness (log2 ratio) -3 -2 -1 0 1at 1070.249 kb on + strand, within trmEat 1070.276 kb on - strand, within trmEat 1070.509 kb on - strand, within trmEat 1070.780 kb on - strandat 1071.036 kb on + strand, within DvMF_0887at 1071.488 kb on - strand, within DvMF_0887at 1071.594 kb on - strand, within DvMF_0887at 1072.083 kb on - strand, within DvMF_0887at 1072.268 kb on - strandat 1072.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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1,070,249 + trmE DvMF_0886 0.71 +0.7
1,070,276 - trmE DvMF_0886 0.73 -0.3
1,070,509 - trmE DvMF_0886 0.89 -3.3
1,070,780 - -0.7
1,071,036 + DvMF_0887 0.13 -2.0
1,071,488 - DvMF_0887 0.43 -2.0
1,071,594 - DvMF_0887 0.50 -2.1
1,072,083 - DvMF_0887 0.83 -2.2
1,072,268 - -2.1
1,072,527 - -2.3

Or see this region's nucleotide sequence