Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0843

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0841 and DvMF_0842 are separated by 165 nucleotidesDvMF_0842 and DvMF_0843 are separated by 154 nucleotidesDvMF_0843 and DvMF_0844 are separated by 424 nucleotides DvMF_0841: DvMF_0841 - glycogen/starch synthase, ADP-glucose type (RefSeq), at 1,016,479 to 1,017,945 _0841 DvMF_0842: DvMF_0842 - NUDIX hydrolase (RefSeq), at 1,018,111 to 1,018,641 _0842 DvMF_0843: DvMF_0843 - glycosyl transferase family 9 (RefSeq), at 1,018,796 to 1,020,058 _0843 DvMF_0844: DvMF_0844 - Sua5/YciO/YrdC/YwlC family protein (RefSeq), at 1,020,483 to 1,021,139 _0844 Position (kb) 1018 1019 1020 1021Strain fitness (log2 ratio) -2 -1 0 1at 1017.860 kb on - strandat 1017.888 kb on - strandat 1018.190 kb on + strand, within DvMF_0842at 1018.191 kb on - strand, within DvMF_0842at 1018.217 kb on + strand, within DvMF_0842at 1018.337 kb on + strand, within DvMF_0842at 1018.345 kb on - strand, within DvMF_0842at 1018.353 kb on + strand, within DvMF_0842at 1018.430 kb on - strand, within DvMF_0842at 1018.574 kb on - strand, within DvMF_0842at 1018.830 kb on - strandat 1019.082 kb on - strand, within DvMF_0843at 1019.099 kb on + strand, within DvMF_0843at 1019.128 kb on - strand, within DvMF_0843at 1019.142 kb on - strand, within DvMF_0843at 1019.646 kb on + strand, within DvMF_0843at 1019.654 kb on - strand, within DvMF_0843at 1019.669 kb on - strand, within DvMF_0843at 1019.678 kb on - strand, within DvMF_0843at 1019.790 kb on - strand, within DvMF_0843at 1019.800 kb on - strand, within DvMF_0843at 1019.836 kb on - strand, within DvMF_0843at 1019.889 kb on + strand, within DvMF_0843at 1019.892 kb on - strand, within DvMF_0843at 1020.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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1,017,860 - -0.4
1,017,888 - -0.4
1,018,190 + DvMF_0842 0.15 -0.2
1,018,191 - DvMF_0842 0.15 -0.4
1,018,217 + DvMF_0842 0.20 -0.4
1,018,337 + DvMF_0842 0.43 -0.3
1,018,345 - DvMF_0842 0.44 +0.2
1,018,353 + DvMF_0842 0.46 -0.4
1,018,430 - DvMF_0842 0.60 +0.4
1,018,574 - DvMF_0842 0.87 -0.6
1,018,830 - -0.5
1,019,082 - DvMF_0843 0.23 +0.3
1,019,099 + DvMF_0843 0.24 -1.2
1,019,128 - DvMF_0843 0.26 -0.6
1,019,142 - DvMF_0843 0.27 -0.8
1,019,646 + DvMF_0843 0.67 -2.0
1,019,654 - DvMF_0843 0.68 -1.1
1,019,669 - DvMF_0843 0.69 -2.2
1,019,678 - DvMF_0843 0.70 -0.3
1,019,790 - DvMF_0843 0.79 +0.7
1,019,800 - DvMF_0843 0.79 -0.5
1,019,836 - DvMF_0843 0.82 -0.4
1,019,889 + DvMF_0843 0.87 -0.0
1,019,892 - DvMF_0843 0.87 +0.3
1,020,256 - -0.5

Or see this region's nucleotide sequence