Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0760

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0759 and DvMF_0760 are separated by 162 nucleotidesDvMF_0760 and DvMF_0761 are separated by 309 nucleotides DvMF_0759: DvMF_0759 - methionyl-tRNA synthetase (RefSeq), at 904,072 to 906,045 _0759 DvMF_0760: DvMF_0760 - PSP1 domain protein (RefSeq), at 906,208 to 907,884 _0760 DvMF_0761: DvMF_0761 - metal dependent phosphohydrolase (RefSeq), at 908,194 to 908,751 _0761 Position (kb) 906 907 908Strain fitness (log2 ratio) -1 0 1 2at 906.192 kb on + strandat 906.520 kb on + strand, within DvMF_0760at 906.858 kb on + strand, within DvMF_0760at 906.974 kb on - strand, within DvMF_0760at 908.087 kb on + strandat 908.245 kb on - strandat 908.448 kb on - strand, within DvMF_0761at 908.538 kb on + strand, within DvMF_0761at 908.672 kb on + strand, within DvMF_0761at 908.680 kb on - strand, within DvMF_0761at 908.680 kb on - strand, within DvMF_0761at 908.741 kb on - strandat 908.755 kb on + strandat 908.755 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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906,192 + -0.4
906,520 + DvMF_0760 0.19 +1.2
906,858 + DvMF_0760 0.39 +0.9
906,974 - DvMF_0760 0.46 +2.3
908,087 + -0.6
908,245 - -0.2
908,448 - DvMF_0761 0.46 +0.4
908,538 + DvMF_0761 0.62 -0.3
908,672 + DvMF_0761 0.86 -0.4
908,680 - DvMF_0761 0.87 -0.8
908,680 - DvMF_0761 0.87 +0.1
908,741 - -0.4
908,755 + -0.9
908,755 + -0.6

Or see this region's nucleotide sequence