Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0652 and DvMF_0653 are separated by 708 nucleotides DvMF_0653 and DvMF_0654 are separated by 2 nucleotides
DvMF_0652: DvMF_0652 - Agmatine deiminase (RefSeq), at 784,731 to 785,843
_0652
DvMF_0653: DvMF_0653 - N-carbamoylputrescine amidase (RefSeq), at 786,552 to 787,493
_0653
DvMF_0654: DvMF_0654 - Amidohydrolase 3 (RefSeq), at 787,496 to 789,118
_0654
Position (kb) 786
787
788 Strain fitness (log2 ratio) -2
-1
0
1 at 785.564 kb on + strand, within DvMF_0652 at 785.569 kb on + strand, within DvMF_0652 at 785.845 kb on + strand at 785.892 kb on - strand at 785.907 kb on + strand at 786.044 kb on + strand at 786.162 kb on + strand at 786.218 kb on - strand at 786.410 kb on - strand at 787.009 kb on + strand, within DvMF_0653 at 787.048 kb on - strand, within DvMF_0653 at 787.048 kb on - strand, within DvMF_0653 at 787.075 kb on + strand, within DvMF_0653 at 787.107 kb on - strand, within DvMF_0653 at 787.229 kb on + strand, within DvMF_0653 at 787.229 kb on + strand, within DvMF_0653 at 787.236 kb on + strand, within DvMF_0653 at 787.270 kb on - strand, within DvMF_0653 at 787.529 kb on + strand at 787.599 kb on + strand at 787.721 kb on + strand, within DvMF_0654 at 787.781 kb on + strand, within DvMF_0654 at 787.790 kb on - strand, within DvMF_0654 at 787.825 kb on - strand, within DvMF_0654 at 787.889 kb on + strand, within DvMF_0654 at 788.301 kb on + strand, within DvMF_0654 at 788.309 kb on - strand, within DvMF_0654 at 788.313 kb on + strand, within DvMF_0654 at 788.336 kb on - strand, within DvMF_0654 at 788.350 kb on - strand, within DvMF_0654 at 788.429 kb on - strand, within DvMF_0654 at 788.457 kb on - strand, within DvMF_0654
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml remove 785,564 + DvMF_0652 0.75 -1.4 785,569 + DvMF_0652 0.75 -0.4 785,845 + -1.6 785,892 - -0.5 785,907 + -0.4 786,044 + -1.4 786,162 + -0.4 786,218 - -0.1 786,410 - -0.8 787,009 + DvMF_0653 0.49 -1.2 787,048 - DvMF_0653 0.53 -1.7 787,048 - DvMF_0653 0.53 -1.6 787,075 + DvMF_0653 0.56 -1.5 787,107 - DvMF_0653 0.59 -2.0 787,229 + DvMF_0653 0.72 -1.9 787,229 + DvMF_0653 0.72 -1.4 787,236 + DvMF_0653 0.73 -1.4 787,270 - DvMF_0653 0.76 -2.1 787,529 + -2.1 787,599 + -0.4 787,721 + DvMF_0654 0.14 -0.3 787,781 + DvMF_0654 0.18 -0.5 787,790 - DvMF_0654 0.18 +0.1 787,825 - DvMF_0654 0.20 +1.4 787,889 + DvMF_0654 0.24 -0.9 788,301 + DvMF_0654 0.50 -0.4 788,309 - DvMF_0654 0.50 -0.5 788,313 + DvMF_0654 0.50 -0.0 788,336 - DvMF_0654 0.52 -1.0 788,350 - DvMF_0654 0.53 -0.2 788,429 - DvMF_0654 0.57 -0.3 788,457 - DvMF_0654 0.59 -0.6
Or see this region's nucleotide sequence