Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0419

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0418 and DvMF_0419 are separated by 96 nucleotidesDvMF_0419 and DvMF_0420 are separated by 222 nucleotides DvMF_0418: DvMF_0418 - biotin/acetyl-CoA-carboxylase ligase (RefSeq), at 492,816 to 493,985 _0418 DvMF_0419: DvMF_0419 - metal dependent phosphohydrolase (RefSeq), at 494,082 to 495,497 _0419 DvMF_0420: DvMF_0420 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 495,720 to 496,640 _0420 Position (kb) 494 495 496Strain fitness (log2 ratio) -2 -1 0 1at 493.728 kb on - strand, within DvMF_0418at 493.745 kb on - strand, within DvMF_0418at 493.887 kb on + strandat 493.887 kb on + strandat 493.923 kb on - strandat 494.116 kb on + strandat 494.143 kb on + strandat 494.250 kb on - strand, within DvMF_0419at 494.575 kb on - strand, within DvMF_0419at 494.582 kb on - strand, within DvMF_0419at 494.604 kb on - strand, within DvMF_0419at 494.708 kb on - strand, within DvMF_0419at 494.739 kb on + strand, within DvMF_0419at 494.744 kb on + strand, within DvMF_0419at 494.863 kb on + strand, within DvMF_0419at 494.868 kb on + strand, within DvMF_0419at 494.876 kb on - strand, within DvMF_0419at 495.078 kb on - strand, within DvMF_0419at 495.079 kb on - strand, within DvMF_0419at 495.256 kb on - strand, within DvMF_0419at 495.401 kb on + strandat 495.566 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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493,728 - DvMF_0418 0.78 +0.3
493,745 - DvMF_0418 0.79 +0.4
493,887 + +0.1
493,887 + +0.0
493,923 - +0.1
494,116 + -0.1
494,143 + -0.9
494,250 - DvMF_0419 0.12 -0.5
494,575 - DvMF_0419 0.35 +0.5
494,582 - DvMF_0419 0.35 -0.2
494,604 - DvMF_0419 0.37 -1.0
494,708 - DvMF_0419 0.44 -0.2
494,739 + DvMF_0419 0.46 -0.6
494,744 + DvMF_0419 0.47 -0.2
494,863 + DvMF_0419 0.55 +0.1
494,868 + DvMF_0419 0.56 -0.0
494,876 - DvMF_0419 0.56 -0.5
495,078 - DvMF_0419 0.70 +0.6
495,079 - DvMF_0419 0.70 -1.8
495,256 - DvMF_0419 0.83 -0.6
495,401 + -0.6
495,566 + -0.6

Or see this region's nucleotide sequence