Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0416

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0414 and DvMF_0415 are separated by 281 nucleotidesDvMF_0415 and DvMF_0416 are separated by 252 nucleotidesDvMF_0416 and DvMF_0417 are separated by 254 nucleotides DvMF_0414: DvMF_0414 - Peptidase M23 (RefSeq), at 482,956 to 484,266 _0414 DvMF_0415: DvMF_0415 - protein of unknown function DUF488 (RefSeq), at 484,548 to 484,940 _0415 DvMF_0416: DvMF_0416 - pyruvate phosphate dikinase PEP/pyruvate-binding (RefSeq), at 485,193 to 488,771 _0416 DvMF_0417: DvMF_0417 - pyruvate carboxylase (RefSeq), at 489,026 to 492,730 _0417 Position (kb) 485 486 487 488 489Strain fitness (log2 ratio) -1 0 1at 484.315 kb on + strandat 484.425 kb on - strandat 484.545 kb on + strandat 484.553 kb on - strandat 484.685 kb on + strand, within DvMF_0415at 485.232 kb on - strandat 488.849 kb on + strandat 488.890 kb on - strandat 489.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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484,315 + -0.3
484,425 - -0.3
484,545 + +0.1
484,553 - -1.5
484,685 + DvMF_0415 0.35 -0.5
485,232 - +0.9
488,849 + -0.8
488,890 - -0.0
489,014 + -1.0

Or see this region's nucleotide sequence