Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0404

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0403 and DvMF_0404 are separated by 224 nucleotidesDvMF_0404 and DvMF_0405 are separated by 151 nucleotides DvMF_0403: DvMF_0403 - metalloendopeptidase, glycoprotease family (RefSeq), at 473,238 to 474,485 _0403 DvMF_0404: DvMF_0404 - fructose-1,6-bisphosphatase (RefSeq), at 474,710 to 475,723 _0404 DvMF_0405: DvMF_0405 - hypothetical protein (RefSeq), at 475,875 to 476,840 _0405 Position (kb) 474 475 476Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 474.640 kb on + strandat 475.104 kb on + strand, within DvMF_0404at 475.238 kb on + strand, within DvMF_0404at 475.544 kb on - strand, within DvMF_0404at 476.013 kb on - strand, within DvMF_0405at 476.171 kb on - strand, within DvMF_0405at 476.394 kb on + strand, within DvMF_0405at 476.671 kb on - strand, within DvMF_0405

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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474,640 + -1.2
475,104 + DvMF_0404 0.39 -1.2
475,238 + DvMF_0404 0.52 -2.7
475,544 - DvMF_0404 0.82 -1.7
476,013 - DvMF_0405 0.14 -1.1
476,171 - DvMF_0405 0.31 -3.9
476,394 + DvMF_0405 0.54 -2.8
476,671 - DvMF_0405 0.82 -4.5

Or see this region's nucleotide sequence