Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0326

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0325 and DvMF_0326 overlap by 1 nucleotidesDvMF_0326 and DvMF_0327 overlap by 8 nucleotides DvMF_0325: DvMF_0325 - methyl-viologen-reducing hydrogenase delta subunit (RefSeq), at 378,996 to 380,501 _0325 DvMF_0326: DvMF_0326 - hydrogenase, putative (RefSeq), at 380,501 to 381,592 _0326 DvMF_0327: DvMF_0327 - oxidoreductase FAD/NAD(P)-binding domain protein (RefSeq), at 381,585 to 382,472 _0327 Position (kb) 380 381 382Strain fitness (log2 ratio) -1 0 1 2at 379.747 kb on + strand, within DvMF_0325at 379.777 kb on + strand, within DvMF_0325at 380.165 kb on + strand, within DvMF_0325at 380.237 kb on + strand, within DvMF_0325at 380.371 kb on + strandat 380.459 kb on - strandat 380.531 kb on + strandat 380.780 kb on + strand, within DvMF_0326at 381.162 kb on + strand, within DvMF_0326at 381.421 kb on + strand, within DvMF_0326at 381.459 kb on + strand, within DvMF_0326at 381.485 kb on - strandat 381.601 kb on + strandat 381.622 kb on + strandat 381.627 kb on + strandat 381.630 kb on - strandat 381.910 kb on - strand, within DvMF_0327at 382.074 kb on + strand, within DvMF_0327at 382.198 kb on + strand, within DvMF_0327

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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379,747 + DvMF_0325 0.50 +1.6
379,777 + DvMF_0325 0.52 +1.9
380,165 + DvMF_0325 0.78 +1.9
380,237 + DvMF_0325 0.82 +1.6
380,371 + +2.3
380,459 - +1.6
380,531 + +2.2
380,780 + DvMF_0326 0.26 +2.0
381,162 + DvMF_0326 0.61 +2.2
381,421 + DvMF_0326 0.84 +1.9
381,459 + DvMF_0326 0.88 +1.6
381,485 - +1.7
381,601 + +1.8
381,622 + +1.7
381,627 + +1.8
381,630 - +1.9
381,910 - DvMF_0327 0.37 +2.5
382,074 + DvMF_0327 0.55 +1.7
382,198 + DvMF_0327 0.69 +1.7

Or see this region's nucleotide sequence