Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0189

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglpX and purU are separated by 376 nucleotidespurU and DvMF_0190 are separated by 212 nucleotidesDvMF_0190 and DvMF_0191 are separated by 184 nucleotides DvMF_0188: glpX - fructose 1,6-bisphosphatase II (RefSeq), at 204,748 to 205,731 glpX DvMF_0189: purU - formyltetrahydrofolate deformylase (RefSeq), at 206,108 to 206,962 purU DvMF_0190: DvMF_0190 - hypothetical protein (RefSeq), at 207,175 to 207,579 _0190 DvMF_0191: DvMF_0191 - hypothetical protein (RefSeq), at 207,764 to 208,000 _0191 Position (kb) 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1at 206.239 kb on + strand, within purUat 206.320 kb on + strand, within purUat 206.328 kb on - strand, within purUat 206.339 kb on + strand, within purUat 206.347 kb on - strand, within purUat 206.414 kb on - strand, within purUat 206.461 kb on - strand, within purUat 206.861 kb on + strand, within purUat 207.032 kb on + strandat 207.063 kb on + strandat 207.076 kb on + strandat 207.086 kb on + strandat 207.300 kb on + strand, within DvMF_0190at 207.472 kb on - strand, within DvMF_0190at 207.503 kb on + strand, within DvMF_0190at 207.529 kb on - strand, within DvMF_0190at 207.714 kb on + strandat 207.910 kb on - strand, within DvMF_0191

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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206,239 + purU DvMF_0189 0.15 -0.5
206,320 + purU DvMF_0189 0.25 -0.4
206,328 - purU DvMF_0189 0.26 -0.3
206,339 + purU DvMF_0189 0.27 +0.3
206,347 - purU DvMF_0189 0.28 -0.1
206,414 - purU DvMF_0189 0.36 +0.3
206,461 - purU DvMF_0189 0.41 -0.1
206,861 + purU DvMF_0189 0.88 +0.1
207,032 + -0.2
207,063 + +0.4
207,076 + -0.4
207,086 + -0.9
207,300 + DvMF_0190 0.31 -1.9
207,472 - DvMF_0190 0.73 -1.1
207,503 + DvMF_0190 0.81 -1.9
207,529 - DvMF_0190 0.87 -3.5
207,714 + -0.7
207,910 - DvMF_0191 0.62 +0.7

Or see this region's nucleotide sequence