Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0041

Experiment: MoYLS4 with Polymyxin B sulfate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0040 and DvMF_0041 are separated by 143 nucleotidesDvMF_0041 and DvMF_0042 are separated by 86 nucleotides DvMF_0040: DvMF_0040 - Mammalian cell entry related domain protein (RefSeq), at 52,319 to 53,302 _0040 DvMF_0041: DvMF_0041 - protein of unknown function DUF330 (RefSeq), at 53,446 to 54,039 _0041 DvMF_0042: DvMF_0042 - diguanylate cyclase (RefSeq), at 54,126 to 55,274 _0042 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1at 52.454 kb on - strand, within DvMF_0040at 52.829 kb on + strand, within DvMF_0040at 52.829 kb on + strand, within DvMF_0040at 52.837 kb on - strand, within DvMF_0040at 52.837 kb on - strand, within DvMF_0040at 52.860 kb on - strand, within DvMF_0040at 52.888 kb on + strand, within DvMF_0040at 53.238 kb on + strandat 53.289 kb on - strandat 53.340 kb on - strandat 53.396 kb on - strandat 53.764 kb on + strand, within DvMF_0041at 53.772 kb on - strand, within DvMF_0041at 53.886 kb on - strand, within DvMF_0041at 54.033 kb on + strandat 54.125 kb on - strandat 54.236 kb on + strandat 54.268 kb on + strand, within DvMF_0042at 54.343 kb on - strand, within DvMF_0042at 54.524 kb on - strand, within DvMF_0042at 54.561 kb on - strand, within DvMF_0042at 54.605 kb on + strand, within DvMF_0042at 54.613 kb on - strand, within DvMF_0042at 54.735 kb on - strand, within DvMF_0042

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.1 mg/ml
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52,454 - DvMF_0040 0.14 -0.9
52,829 + DvMF_0040 0.52 -0.0
52,829 + DvMF_0040 0.52 -0.6
52,837 - DvMF_0040 0.53 +0.6
52,837 - DvMF_0040 0.53 +0.5
52,860 - DvMF_0040 0.55 -0.4
52,888 + DvMF_0040 0.58 -1.1
53,238 + -0.6
53,289 - -0.5
53,340 - -0.7
53,396 - -0.4
53,764 + DvMF_0041 0.54 +1.2
53,772 - DvMF_0041 0.55 -0.4
53,886 - DvMF_0041 0.74 +0.1
54,033 + -0.8
54,125 - -0.5
54,236 + -0.9
54,268 + DvMF_0042 0.12 -0.9
54,343 - DvMF_0042 0.19 -0.5
54,524 - DvMF_0042 0.35 +0.9
54,561 - DvMF_0042 0.38 +0.4
54,605 + DvMF_0042 0.42 -1.4
54,613 - DvMF_0042 0.42 -0.6
54,735 - DvMF_0042 0.53 -2.3

Or see this region's nucleotide sequence