Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3718

Experiment: Thymidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3717 and Shewana3_3718 are separated by 168 nucleotidesShewana3_3718 and Shewana3_3719 are separated by 15 nucleotides Shewana3_3717: Shewana3_3717 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 4,460,267 to 4,461,187 _3717 Shewana3_3718: Shewana3_3718 - DedA family protein (RefSeq), at 4,461,356 to 4,461,967 _3718 Shewana3_3719: Shewana3_3719 - hypothetical protein (RefSeq), at 4,461,983 to 4,463,518 _3719 Position (kb) 4461 4462Strain fitness (log2 ratio) -1 0 1at 4461.293 kb on - strandat 4461.552 kb on + strand, within Shewana3_3718at 4461.673 kb on + strand, within Shewana3_3718at 4461.714 kb on + strand, within Shewana3_3718at 4461.714 kb on + strand, within Shewana3_3718at 4461.722 kb on - strand, within Shewana3_3718at 4461.976 kb on - strandat 4461.980 kb on + strandat 4461.990 kb on + strandat 4462.245 kb on + strand, within Shewana3_3719at 4462.318 kb on + strand, within Shewana3_3719at 4462.361 kb on + strand, within Shewana3_3719at 4462.706 kb on - strand, within Shewana3_3719at 4462.772 kb on + strand, within Shewana3_3719at 4462.853 kb on + strand, within Shewana3_3719at 4462.853 kb on + strand, within Shewana3_3719at 4462.941 kb on - strand, within Shewana3_3719at 4462.965 kb on + strand, within Shewana3_3719

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine (C)
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4,461,293 - +0.0
4,461,552 + Shewana3_3718 0.32 +1.6
4,461,673 + Shewana3_3718 0.52 +0.1
4,461,714 + Shewana3_3718 0.58 +1.7
4,461,714 + Shewana3_3718 0.58 -0.5
4,461,722 - Shewana3_3718 0.60 +1.4
4,461,976 - -0.7
4,461,980 + -1.1
4,461,990 + -0.6
4,462,245 + Shewana3_3719 0.17 -0.5
4,462,318 + Shewana3_3719 0.22 -0.1
4,462,361 + Shewana3_3719 0.25 +1.1
4,462,706 - Shewana3_3719 0.47 -0.3
4,462,772 + Shewana3_3719 0.51 -0.0
4,462,853 + Shewana3_3719 0.57 +0.1
4,462,853 + Shewana3_3719 0.57 +0.2
4,462,941 - Shewana3_3719 0.62 -0.6
4,462,965 + Shewana3_3719 0.64 -0.7

Or see this region's nucleotide sequence